# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hhgA	139	2.41e-14		
1rhsA	296	4.22e-14	c.46.1.2,c.46.1.2	32703,32704
1e0cA	271	4.87e-14	c.46.1.2,c.46.1.2	32717,32718
1rhs	296	9.80e-14		
1yt8A	539	8.60e-13	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
1gmxA	108	1.09e-12	c.46.1.3	65355
1qb0A	211	5.30e-12	c.46.1.1	32699
2fsxA	148	5.52e-12		
1uarA	285	7.26e-12	c.46.1.2,c.46.1.2	107762,107763
1c25	161	1.48e-11		
1okgA	373	1.74e-11	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
1t3kA	152	2.13e-11	c.46.1.1	106357
2a2kA	175	3.57e-11		
1ymkA	175	3.84e-11	c.46.1.1	123699
1whbA	157	5.55e-11	c.46.1.4	114639
2eg4A	230	8.47e-11		
2j6pA	152	3.65e-10		
2oucA	142	2.19e-09		
2gwfA	157	2.32e-09	c.46.1.4	135802
1wv9A	94	3.52e-09		
1yn9A	169	2.689		
2f46A	156	4.876		
1x24A	180	5.353		
2c3zA	222	6.606		
1zclA	180	6.930		
1yz4A	160	8.221		
2c5sA	413	8.982	c.26.2.6,d.308.1.1	129950,129951
1ywfA	296	12.33	c.45.1.5	124144
2c46A	241	16.26		
1i9sA	210	16.95	c.45.1.1	62099
2i6jA	161	17.69		
1vhoA	346	18.01	b.49.3.1,c.56.5.4	100694,100695
2imgA	151	18.24		
2dbqA	334	18.53		
2r0bA	154	19.16		
2cybA	323	19.30		
1eudB	396	23.42	c.23.4.1,d.142.1.4	31150,41571
1wrmA	165	24.96		
1tf5A	844	25.05	a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19	106834,106835,106836,106837
1rxdA	159	26.23	c.45.1.1	111959
1yloA	348	26.29	b.49.3.1,c.56.5.4	123659,123660
1igs	248	26.37		
2b4uA	335	27.35		
2nt2A	145	28.76		
1vhrA	184	29.26	c.45.1.1	32651
1y0eA	223	32.74	c.1.2.5	116297
1xfoA	357	32.82	b.49.3.1,c.56.5.4	115265,115266
2p4dA	172	35.50		
2dekA	265	37.19	c.90.1.1	131430
2cftA	298	37.31		
2b4pA	334	39.57		
1i9gA	280	41.16	c.66.1.13	62090
2fh7A	595	41.92		
2hxpA	155	41.97		
2j16A	182	45.64		
3b5vA	248	45.84		
2df8A	325	46.74		
1zzwA	149	47.54		
2e18A	257	47.60		
3cwvA	369	48.15		
1r3sA	367	49.23	c.1.22.1	96963
1oheA	348	50.30	c.45.1.1,c.45.1.1	87013,87014
2p4gA	270	51.08		
2nu8B	388	52.46		
2fshA	853	53.90		
1t5iA	172	53.98	c.37.1.19	106450
1npyA	271	54.06	c.2.1.7,c.58.1.5	85995,85996
2q1sA	377	56.75		
1y0yA	353	56.77	b.49.3.1,c.56.5.4	122514,122515
1ep3A	311	58.02	c.1.4.1	28597
1sur	215	58.31		
1fpzA	212	58.60	c.45.1.1	59976
2esbA	188	59.43		
2f4dA	184	60.24		
1p15A	253	62.71	c.45.1.2	93894
1vl2A	421	67.48	c.26.2.1,d.210.1.1	108708,108709
2jg2A	422	68.39		
2e5fA	325	68.77		
2e0tA	151	71.29		
1jlnA	297	73.58	c.45.1.2	63172
1a53	247	75.95		
1zckA	154	76.06		
2bo1A	101	76.74		
2p0lA	288	78.74		
2eo5A	419	79.22		
2d13A	227	82.44	c.26.2.1	131121
2pt7A	330	82.95		
1k92A	455	83.77	c.26.2.1,d.210.1.1	68325,68326
2hhjA	267	85.46	c.60.1.1	136497
2hcmA	164	87.31		
2b69A	343	87.35	c.2.1.2	127974
2h1rA	299	87.89		
2f2sA	406	88.29		
2b4gA	317	88.36	c.1.4.1	127829
2z0jA	237	89.85