# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hhgA 139 6.53e-14 1rhsA 296 1.05e-13 c.46.1.2,c.46.1.2 32703,32704 1e0cA 271 1.25e-13 c.46.1.2,c.46.1.2 32717,32718 1rhs 296 3.03e-13 1gmxA 108 2.33e-12 c.46.1.3 65355 1yt8A 539 3.32e-12 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1uarA 285 6.15e-12 c.46.1.2,c.46.1.2 107762,107763 1qb0A 211 1.18e-11 c.46.1.1 32699 2fsxA 148 1.76e-11 1c25 161 1.82e-11 1t3kA 152 3.14e-11 c.46.1.1 106357 1okgA 373 4.34e-11 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 1ymkA 175 5.19e-11 c.46.1.1 123699 2a2kA 175 6.33e-11 1whbA 157 7.61e-11 c.46.1.4 114639 2eg4A 230 1.78e-10 2j6pA 152 1.29e-09 2gwfA 157 2.50e-09 c.46.1.4 135802 2oucA 142 5.63e-09 1wv9A 94 6.03e-09 1yn9A 169 2.935 1zclA 180 5.927 1x24A 180 6.806 2f46A 156 7.772 1ywfA 296 9.674 c.45.1.5 124144 1yz4A 160 12.57 2c5sA 413 15.10 c.26.2.6,d.308.1.1 129950,129951 1wrmA 165 15.70 2c3zA 222 15.98 2i6jA 161 17.19 2c46A 241 17.70 2r0bA 154 19.07 1eudB 396 20.23 c.23.4.1,d.142.1.4 31150,41571 2dbqA 334 20.35 1i9sA 210 20.36 c.45.1.1 62099 2imgA 151 20.97 1yloA 348 22.78 b.49.3.1,c.56.5.4 123659,123660 1rxdA 159 22.88 c.45.1.1 111959 1vhoA 346 23.29 b.49.3.1,c.56.5.4 100694,100695 2b4uA 335 24.37 2nu8B 388 27.17 1tf5A 844 28.05 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 2p4dA 172 30.86 2dekA 265 31.09 c.90.1.1 131430 2bo1A 101 31.69 2nt2A 145 33.26 2b4pA 334 37.06 2cftA 298 37.88 2cybA 323 39.19 1vhrA 184 39.47 c.45.1.1 32651 2hxpA 155 39.54 1i9gA 280 48.08 c.66.1.13 62090 1or8A 340 48.30 c.66.1.6 93451 1f8fA 371 48.42 b.35.1.2,c.2.1.1 83246,83247 1zzwA 149 48.89 1npyA 271 48.96 c.2.1.7,c.58.1.5 85995,85996 2j16A 182 50.16 2p4gA 270 51.56 1igs 248 51.80 2fh7A 595 52.63 1oywA 523 52.75 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1p15A 253 53.47 c.45.1.2 93894 1zckA 154 53.81 2f4dA 184 53.88 1r3sA 367 53.94 c.1.22.1 96963 2esbA 188 55.60 2e0tA 151 56.10 1fpzA 212 56.31 c.45.1.1 59976 2z0jA 237 56.39 2q1sA 377 58.20 1t5iA 172 61.50 c.37.1.19 106450 2fshA 853 63.59 1xfoA 357 64.71 b.49.3.1,c.56.5.4 115265,115266 1y0yA 353 64.93 b.49.3.1,c.56.5.4 122514,122515 2a9fA 398 66.56 1sur 215 67.21 3b5vA 248 67.92 1bif 469 69.27 1im8A 244 69.98 c.66.1.14 66212 1y0eA 223 71.69 c.1.2.5 116297 2e18A 257 72.35 1jlnA 297 74.40 c.45.1.2 63172 2pt7A 330 77.10 2fytA 340 77.83 c.66.1.6 134391 2eihA 343 79.01 2iw1A 374 79.90 c.87.1.8 137738 3cwvA 369 80.49 1ep3A 311 80.79 c.1.4.1 28597 2hhjA 267 83.42 c.60.1.1 136497 2hcmA 164 84.99 1oheA 348 85.98 c.45.1.1,c.45.1.1 87013,87014 2jg2A 422 86.42 2f2sA 406 87.59 1qorA 327 89.01 b.35.1.2,c.2.1.1 24766,29782 2df8A 325 89.13