# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hhgA	139	3.20e-13		
1rhsA	296	8.54e-13	c.46.1.2,c.46.1.2	32703,32704
1e0cA	271	2.44e-12	c.46.1.2,c.46.1.2	32717,32718
1rhs	296	4.14e-12		
1gmxA	108	2.18e-11	c.46.1.3	65355
1qb0A	211	4.53e-11	c.46.1.1	32699
1uarA	285	5.96e-11	c.46.1.2,c.46.1.2	107762,107763
1c25	161	6.76e-11		
2fsxA	148	8.50e-11		
1whbA	157	8.57e-11	c.46.1.4	114639
1yt8A	539	1.33e-10	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
1ymkA	175	1.75e-10	c.46.1.1	123699
2a2kA	175	2.15e-10		
1t3kA	152	4.49e-10	c.46.1.1	106357
1okgA	373	5.42e-10	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
2eg4A	230	1.33e-09		
2j6pA	152	1.56e-09		
2gwfA	157	4.94e-09	c.46.1.4	135802
2oucA	142	1.28e-08		
1wv9A	94	2.39e-07		
2dbqA	334	4.806		
2f46A	156	6.361		
1yn9A	169	7.506		
1vhrA	184	9.396	c.45.1.1	32651
1zclA	180	16.26		
1i9sA	210	23.62	c.45.1.1	62099
2e18A	257	24.00		
1oheA	348	26.31	c.45.1.1,c.45.1.1	87013,87014
2hcrA	326	27.30		
1gdhA	320	28.97	c.2.1.4,c.23.12.1	30095,31355
1dxy	333	29.01		
1d5rA	324	32.48	b.7.1.1,c.45.1.1	23181,32697
2b4uA	335	33.03		
2c5aA	379	33.88	c.2.1.2	129894
2cftA	298	34.38		
2c3zA	222	40.23		
2b4gA	317	41.32	c.1.4.1	127829
1usgA	346	42.95	c.93.1.1	99864
1uwcA	261	43.10	c.69.1.17	100101
1psdA	409	43.63	c.2.1.4,c.23.12.1,d.58.18.1	30097,31357,39354
1tib	269	44.44		
1fpzA	212	46.67	c.45.1.1	59976
1eudB	396	47.42	c.23.4.1,d.142.1.4	31150,41571
2q1sA	377	47.86		
1rpa	342	52.59		
1y0eA	223	53.75	c.1.2.5	116297
2r0bA	154	60.38		
2oycA	306	60.46		
1u24A	337	62.88	c.45.1.4	112968
2douA	376	64.68		
2iw1A	374	65.13	c.87.1.8	137738
2i6jA	161	65.55		
1fsgA	233	67.06	c.61.1.1	34029
1x24A	180	67.97		
1i2cA	404	69.91	c.2.1.2	83666
1k92A	455	70.18	c.26.2.1,d.210.1.1	68325,68326
2df8A	325	70.81		
2f4dA	184	72.39		
1wwkA	307	77.07		
1xdwA	331	78.24		
2liv	344	79.38		
1vl2A	421	79.59	c.26.2.1,d.210.1.1	108708,108709
1zzwA	149	81.78		
2qf2A	624	82.58		
1odkA	235	82.73	c.56.2.1	86863
1npyA	271	83.29	c.2.1.7,c.58.1.5	85995,85996
2hxpA	155	83.89		
2hrzA	342	85.54		
3brqA	296	85.90		
2bjhA	260	85.93		
2b69A	343	86.43	c.2.1.2	127974
1yz4A	160	87.72		
1j7xA	302	89.53	c.14.1.2	66425