# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1rhsA	296	2.53e-10	c.46.1.2,c.46.1.2	32703,32704
2hhgA	139	2.65e-10		
1rhs	296	6.24e-10		
1e0cA	271	6.25e-10	c.46.1.2,c.46.1.2	32717,32718
1uarA	285	2.89e-09	c.46.1.2,c.46.1.2	107762,107763
1yt8A	539	5.13e-09	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
1gmxA	108	5.37e-09	c.46.1.3	65355
1whbA	157	9.31e-09	c.46.1.4	114639
1qb0A	211	9.88e-09	c.46.1.1	32699
2fsxA	148	1.28e-08		
1c25	161	1.76e-08		
1ymkA	175	2.16e-08	c.46.1.1	123699
1t3kA	152	2.48e-08	c.46.1.1	106357
2a2kA	175	2.57e-08		
1okgA	373	3.84e-08	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
2eg4A	230	7.21e-08		
2j6pA	152	8.44e-08		
2gwfA	157	4.06e-07	c.46.1.4	135802
2oucA	142	5.86e-07		
1wv9A	94	1.21e-06		
1yn9A	169	5.723		
2f46A	156	11.98		
2dbqA	334	12.93		
1vhrA	184	15.26	c.45.1.1	32651
1zclA	180	18.02		
1yz4A	160	18.68		
1d5rA	324	20.37	b.7.1.1,c.45.1.1	23181,32697
1fpzA	212	25.27	c.45.1.1	59976
2c3zA	222	33.21		
1wrmA	165	33.70		
1ywfA	296	35.09	c.45.1.5	124144
2dekA	265	35.56	c.90.1.1	131430
1psdA	409	35.65	c.2.1.4,c.23.12.1,d.58.18.1	30097,31357,39354
1x24A	180	36.43		
2p4dA	172	37.14		
2b4uA	335	39.61		
1oheA	348	40.13	c.45.1.1,c.45.1.1	87013,87014
1vhoA	346	41.84	b.49.3.1,c.56.5.4	100694,100695
1jlnA	297	44.26	c.45.1.2	63172
1zzwA	149	47.98		
2fh7A	595	48.46		
2b4gA	317	49.63	c.1.4.1	127829
2imgA	151	51.53		
2e18A	257	52.77		
2b4pA	334	55.53		
2esbA	188	57.10		
2i6jA	161	58.08		
2r0bA	154	62.13		
1i9sA	210	62.49	c.45.1.1	62099
2q1sA	377	66.37		
1sur	215	66.52		
2jg2A	422	67.02		
2c46A	241	67.59		
2nt2A	145	71.72		
1rxdA	159	71.76	c.45.1.1	111959
1ir6A	424	73.55	c.107.1.2	71342
3b2yA	275	75.18		
2cftA	298	77.82		
1larA	575	84.17	c.45.1.2,c.45.1.2	32693,32694
2j16A	182	86.76		
2gv8A	447	89.76	c.3.1.5,c.3.1.5	135759,135760