# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1rhs 296 1.10e-11 2hhgA 139 2.86e-11 1rhsA 296 3.29e-11 c.46.1.2,c.46.1.2 32703,32704 1e0cA 271 7.68e-11 c.46.1.2,c.46.1.2 32717,32718 1uarA 285 3.28e-10 c.46.1.2,c.46.1.2 107762,107763 1gmxA 108 8.62e-10 c.46.1.3 65355 1yt8A 539 8.65e-09 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2eg4A 230 3.37e-08 2a2kA 175 5.15e-08 1ymkA 175 5.19e-08 c.46.1.1 123699 1whbA 157 5.35e-08 c.46.1.4 114639 1qb0A 211 7.52e-08 c.46.1.1 32699 1c25 161 1.07e-07 2gwfA 157 1.21e-07 c.46.1.4 135802 2fsxA 148 1.31e-07 2j6pA 152 2.44e-07 1t3kA 152 1.68e-06 c.46.1.1 106357 2oucA 142 2.36e-06 1okgA 373 2.61e-06 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 1wv9A 94 2.26e-05 1i9sA 210 0.5588 c.45.1.1 62099 2c46A 241 0.5794 1yn9A 169 1.103 2f46A 156 2.656 1pe1A 267 4.682 c.1.10.4 94591 2fbyA 205 5.030 1xcbA 211 6.911 a.4.5.38,c.2.1.12 109552,109553 1zhaA 267 6.916 2cc0A 195 7.584 c.6.2.3 130209 1j2rA 199 7.914 c.33.1.3 90788 2e6mA 208 8.022 2nwrA 267 8.599 1o60A 292 9.621 c.1.10.4 92532 2vq3A 215 9.762 1zu0A 529 11.59 1im5A 180 11.78 c.33.1.3 66211 1fpzA 212 11.98 c.45.1.1 59976 2i4iA 417 12.66 1m3uA 264 12.67 c.1.12.8 84784 2dbqA 334 12.94 2cukA 311 14.47 1yacA 208 15.67 c.33.1.3 31757 2h0rA 216 17.51 1ny1A 240 18.19 c.6.2.3 86395 1vhrA 184 18.24 c.45.1.1 32651 1yt3A 375 18.36 a.60.8.3,a.60.8.3,c.55.3.5 123992,123993,123994 2o7iA 592 19.80 1oheA 348 20.02 c.45.1.1,c.45.1.1 87013,87014 1t6t1 118 20.21 2r0bA 154 21.12 2f4dA 184 21.45 1xg4A 295 21.74 1vr0A 247 21.88 c.148.1.1 120428 2qrlA 394 24.94 2d1pC 95 25.08 c.114.1.2 131138 1mumA 295 28.42 c.1.12.7 85108 1ujqA 305 28.75 c.1.12.7 99463 2r3bA 310 29.20 1pswA 348 29.36 c.87.1.7 88287 2dt5A 211 31.18 a.4.5.38,c.2.1.12 131708,131709 2c3zA 222 31.42 1o5oA 221 31.66 c.61.1.1 92509 2hxpA 155 32.00 1w5fA 353 32.02 c.32.1.1,d.79.2.1 114247,114248 1gdhA 320 32.24 c.2.1.4,c.23.12.1 30095,31355 2bs9A 503 32.49 b.71.1.2,c.1.8.3 129062,129063 2zbtA 297 33.20 3cvjA 243 34.93 2a5hA 416 36.53 1wwkA 307 38.50 2bl0B 145 38.76 3bk2A 562 39.98 1rjdA 334 40.20 c.66.1.37 97558 2d73A 738 41.70 2c1iA 431 42.14 c.6.2.3,d.341.1.1 129636,129637 1wd5A 208 42.17 c.61.1.1 114524 2b4pA 334 42.19 2c1gA 431 42.92 c.6.2.3,d.341.1.1 129632,129633 2qpqA 301 43.08 1nf9A 207 45.07 c.33.1.3 85631 2z1dA 372 45.12 1zclA 180 45.95 2grvA 621 45.99 1b0aA 288 46.00 c.2.1.7,c.58.1.2 30286,33934 2hqsC 118 47.45 d.79.7.1 136666 2j5bA 348 47.79 2drvA 200 47.85 2dp3A 257 48.24 1a4iA 301 48.48 c.2.1.7,c.58.1.2 30278,33926 1dpeA 507 48.98 c.94.1.1 35799 1oapA 109 49.16 d.79.7.1 92706 1yyaA 250 49.85 1qb7A 236 50.99 c.61.1.1 34087 1ygyA 529 51.22 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 2kfnA 605 51.23 c.55.3.5,e.8.1.1 33682,42975 1d5rA 324 51.39 b.7.1.1,c.45.1.1 23181,32697 1ybdA 239 51.48 c.73.1.3 122884 2akzA 439 51.65 c.1.11.1,d.54.1.1 126944,126945 1d0vA 356 52.30 c.39.1.1 32476 2glxA 332 56.09 2a1fA 247 56.57 c.73.1.3 125991 2b34A 199 56.81 2du2A 374 57.23 1l5oA 356 57.82 c.39.1.1 77711 1a48 306 58.39 1ofgA 381 59.08 c.2.1.3,d.81.1.5 30064,39979 2p4dA 172 59.30 2uyoA 310 59.40 1tljA 213 60.12 d.282.1.1 107126 1nofA 383 60.33 b.71.1.2,c.1.8.3 92020,92021 1npyA 271 61.29 c.2.1.7,c.58.1.5 85995,85996 3brqA 296 61.61 1vpbA 451 62.21 d.283.1.1 113950 1qcwA 410 62.52 c.1.4.1 28622 2yyvA 227 62.56 1m45A 148 62.61 a.39.1.5 78598 1gnlA 544 62.74 e.26.1.1 70287 1oneA 436 63.20 c.1.11.1,d.54.1.1 29200,38844 1psdA 409 63.29 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 3bi1A 709 63.33 1u9yA 284 63.54 c.61.1.2,c.61.1.2 119655,119656 1brmA 367 64.49 c.2.1.3,d.81.1.1 30030,39945 2gmwA 211 66.42 2a67A 167 66.92 2hp1A 432 67.22 1w63A 618 67.23 i.23.1.1 109192 2nv2A 294 67.47 1vl5A 260 67.85 c.66.1.41 108720 1o66A 275 67.98 c.1.12.8 92547 1r1qA 100 68.69 d.93.1.1 104763 2cnqA 306 68.75 d.143.1.1 130646 1wfxA 186 70.24 d.166.1.5 114596 1i2oA 316 71.70 c.1.10.1 61574 1neyA 247 72.85 c.1.1.1 80449 1h6kA 757 73.54 a.118.1.14,a.118.1.14,a.118.1.14 60675,60676,60677 2ordA 397 73.77 3bhxA 709 73.83 1xxlA 239 73.91 c.66.1.41 116203 1oywA 523 75.20 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2al2A 436 75.96 c.1.11.1,d.54.1.1 126953,126954 1gntA 553 76.22 e.26.1.1 70290 2al1A 436 76.64 c.1.11.1,d.54.1.1 126949,126950 2ql3A 209 77.86 2it2A 200 78.68 2hj0A 519 79.22 2ht9A 146 80.02 1x24A 180 80.43 1tb3A 352 82.12 c.1.4.1 119205 1i7dA 659 82.15 e.10.1.1 61886 1mlaA 309 83.54 c.19.1.1,d.58.23.1 31031,39383 2uz0A 263 83.85 2f6kA 307 83.96 c.1.9.15 133047 2ptzA 432 84.10 2or4A 709 84.63 a.48.2.1,c.8.4.1,c.56.5.5 139258,139259,139260 2db3A 434 85.47 2nvaA 372 85.66 1yz4A 160 85.66 1x9gA 200 86.36 c.33.1.3 109527 2byjA 439 86.99 c.67.1.4 129483 2i6jA 161 87.58 1r2rA 248 87.69 c.1.1.1 96875 2qg3A 208 89.27 1zn8A 180 89.33 c.61.1.1 125376