Best Alignments for T0409

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1q46A	1.1761e+00	1q46A/T0409-1q46A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.60.14.1 b.40.4.5
2a19A	1.5240e+00	2a19A/T0409-2a19A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1go3E	3.4183e+00	1go3E/T0409-1go3E-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.40.4.5 d.230.1.1
1y14B	3.8931e+00	1y14B/T0409-1y14B-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.40.4.5 d.230.1.1
3bzcA	4.3283e+00	3bzcA/T0409-3bzcA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2j58A	1.2931e+01	2j58A/T0409-2j58A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2ba1A	1.5144e+01	2ba1A/T0409-2ba1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2nn6H	1.6020e+01	2nn6H/T0409-2nn6H-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1zeqX	2.4202e+01	1zeqX/T0409-1zeqX-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2je6I	2.4796e+01	2je6I/T0409-2je6I-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1w9iA	2.4955e+01	1w9iA/T0409-1w9iA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2idrA	2.5247e+01	2idrA/T0409-2idrA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1zlmA	2.5833e+01	1zlmA/T0409-1zlmA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1w70A	2.6762e+01	1w70A/T0409-1w70A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2d1xA	2.7911e+01	2d1xA/T0409-2d1xA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3c8iA	2.8222e+01	3c8iA/T0409-3c8iA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2drmA	2.9368e+01	2drmA/T0409-2drmA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2g6fX	2.9465e+01	2g6fX/T0409-2g6fX-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1zx6A	2.9621e+01	1zx6A/T0409-1zx6A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3c0cA	2.9780e+01	3c0cA/T0409-3c0cA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001