Best Alignments for T0409

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1go3E	5.1174e-01	1go3E/T0409-1go3E-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.40.4.5 d.230.1.1
2a19A	2.1888e+00	2a19A/T0409-2a19A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1q46A	6.1316e+00	1q46A/T0409-1q46A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.60.14.1 b.40.4.5
1wi5A	9.2829e+00	1wi5A/T0409-1wi5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.40.4.5
1y14B	1.0160e+01	1y14B/T0409-1y14B-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.40.4.5 d.230.1.1
3bzcA	1.5251e+01	3bzcA/T0409-3bzcA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2je6I	1.9439e+01	2je6I/T0409-2je6I-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2ba1A	1.9816e+01	2ba1A/T0409-2ba1A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1ub0A	2.0959e+01	1ub0A/T0409-1ub0A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1jo8A	2.1293e+01	1jo8A/T0409-1jo8A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.2.1
1w70A	2.1935e+01	1w70A/T0409-1w70A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3c8iA	2.3374e+01	3c8iA/T0409-3c8iA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1d0yA	2.3743e+01	1d0yA/T0409-1d0yA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.3.1 c.37.1.9
1at0	2.4129e+01	1at0/T0409-1at0-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2j05A	2.6774e+01	2j05A/T0409-2j05A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2bz8A	2.8232e+01	2bz8A/T0409-2bz8A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1wlpB	2.8507e+01	1wlpB/T0409-1wlpB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.2.1
2j58A	2.8635e+01	2j58A/T0409-2j58A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1zlmA	2.9334e+01	1zlmA/T0409-1zlmA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1u06A	3.2168e+01	1u06A/T0409-1u06A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.2.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001