# List of top-scoring protein chains for T0409.t2k-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1semA	58	28.54	b.34.2.1	24544
1k76A	62	28.66	b.34.2.1	84343
2semA	60	28.71	b.34.2.1	24546
1ripA	81	46.87	b.40.4.5	25357
2pmzE	180	49.45		
1zuyA	58	51.61		
1qd7I	89	52.10	i.1.1.3	45872
1eg0G	93	53.84	i.1.1.1	45813
2cqoA	119	57.62		
1oebA	62	59.29	b.34.2.1	86909
1gowA	489	62.12	c.1.8.4	28981
1uwiA	489	63.23	c.1.8.4	119759
1uwsA	489	65.58	c.1.8.4	108073
2cudA	79	68.46		
1gcqA	61	70.68	b.34.2.1	60434
1gfcA	59	70.85	b.34.2.1	24537
1i94Q	104	73.53	b.40.4.5	62008
2egaA	70	75.13		
2ed0A	78	78.57		
1h3hA	60	79.95	b.34.2.1	83468
1k3rA	268	82.68	b.40.4.10,c.116.1.2	72018,72019
2vqeQ	105	83.82		
2uubQ	105	84.87	b.40.4.5	139948
1n32Q	104	85.34	b.40.4.5	79886
1ruwA	69	85.96		
2bkdN	134	87.09		
2nwmA	65	88.62		
1ov3A	138	88.65	b.34.2.1,b.34.2.1	87451,87452