# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2a19A	175	2.538		
1d0yA	761	5.043	b.34.3.1,c.37.1.9	24581,32178
1at0	145	8.032		
1q46A	175	9.040	a.60.14.1,b.40.4.5	111594,111595
1go3E	187	9.322	b.40.4.5,d.230.1.1	83054,83055
2j58A	359	10.87		
2idrA	177	12.37		
3bzcA	785	14.99		
1eziA	228	15.38	c.68.1.13	34512
1zeqX	84	15.94		
1jo8A	58	17.44	b.34.2.1	71774
1ej1A	190	17.99	d.86.1.1	40144
2bkdN	134	20.87		
2j05A	65	21.19		
1w70A	60	21.32		
3ladA	476	21.59	c.3.1.5,c.3.1.5,d.87.1.1	30573,30574,40208
1at0A	145	22.80	b.86.1.1	28374
1y14B	171	23.90	b.40.4.5,d.230.1.1	116323,116324
1vk3A	615	24.38	d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1	100846,100847,100848,100849
3c8iA	141	24.86		
3c0cA	73	25.17		
1zlmA	58	25.70		
2id0A	644	26.66		
1u06A	62	28.14	b.34.2.1	119404
1efnA	59	28.62	b.34.2.1	24465
1eyrA	228	29.03	c.68.1.13	34514
2bz8A	58	29.53		
2qf3A	243	29.82		
1ipcA	217	30.13	d.86.1.1	71257
1zx6A	58	33.82		
1ckaA	57	33.85	b.34.2.1	24459
2j6fA	62	34.10		
1ytbA	180	34.22	d.129.1.1,d.129.1.1	41276,41277
1y0mA	61	34.57		
1l8bA	190	34.96	d.86.1.1	73683
2as9A	210	35.71		
2o31A	67	36.42		
1wlpB	138	38.07	b.34.2.1	121010
2o9sA	67	40.15		
1yn8A	59	40.93		
2d1xA	66	41.01		
2gncA	60	42.22		
2ja9A	175	42.25		
1qnaA	200	43.03	d.129.1.1,d.129.1.1	41226,41227
2g6fX	59	43.47		
2je6I	251	43.58		
2jgbA	195	46.72		
1ywpA	64	46.81		
1kl9A	182	48.64	a.60.14.1,b.40.4.5	111574,111575
1c9bB	180	48.86	d.129.1.1,d.129.1.1	41216,41217
1hd3A	62	49.00	b.34.2.1	65802
2ix0A	663	50.35		
1cdwA	179	51.41	d.129.1.1,d.129.1.1	41212,41213
1wdxA	69	52.26		
1oebA	62	53.11	b.34.2.1	86909
1x2kA	68	53.22		
2r3uA	211	54.94		
2drmA	58	55.09		
1semA	58	56.57	b.34.2.1	24544
2aieP	203	58.06		
1ruwA	69	59.82		
2dt5A	211	60.00	a.4.5.38,c.2.1.12	131708,131709
1ng2A	193	61.22	b.34.2.1,b.34.2.1	85660,85661
2qcpX	80	61.61		
1mp9A	198	61.83	d.129.1.1,d.129.1.1	91385,91386
1yppA	286	62.56	b.40.5.1	25407
2ak5A	64	63.37		
8prkA	287	64.43	b.40.5.1	25395
1e9gA	286	65.21	b.40.5.1	59393
1hh2P	344	67.35	b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1	65835,65836,65837,65838
1mp4A	292	69.18	c.68.1.6	79376
1tg0A	68	70.93		
2fp7B	172	72.91	b.47.1.3	133899
2gy9D	204	74.56		
1n3gA	113	81.95	d.204.1.1	79962
3cp0A	82	82.26		
1yfnA	118	84.12	b.136.1.1	123080
1ov3A	138	84.58	b.34.2.1,b.34.2.1	87451,87452
2pn0A	141	85.21		
2ba1A	179	85.90		
1gcqA	61	87.45	b.34.2.1	60434
1d3uA	181	88.15	d.129.1.1,d.129.1.1	41290,41291
2ggrA	76	88.85		
1jxmA	301	89.16	b.34.2.1,c.37.1.1	67420,67421
2p6yA	142	89.97