# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2a19A 175 3.383 1go3E 187 4.480 b.40.4.5,d.230.1.1 83054,83055 1q46A 175 5.325 a.60.14.1,b.40.4.5 111594,111595 1at0 145 9.307 1d0yA 761 9.362 b.34.3.1,c.37.1.9 24581,32178 2idrA 177 10.30 2j58A 359 11.39 1zlmA 58 13.43 2bz8A 58 13.65 1vk3A 615 13.67 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 100846,100847,100848,100849 1u06A 62 13.75 b.34.2.1 119404 2j05A 65 14.02 1y14B 171 14.15 b.40.4.5,d.230.1.1 116323,116324 1jo8A 58 14.25 b.34.2.1 71774 1at0A 145 14.38 b.86.1.1 28374 1ckaA 57 15.16 b.34.2.1 24459 1w70A 60 15.25 1efnA 59 15.35 b.34.2.1 24465 1wlpB 138 17.96 b.34.2.1 121010 2j6fA 62 18.46 1wdxA 69 18.52 1ywpA 64 18.74 1y0mA 61 19.48 1ej1A 190 19.68 d.86.1.1 40144 2d1xA 66 19.68 2je6I 251 19.79 2o31A 67 20.23 1zeqX 84 20.40 2o9sA 67 20.56 2bkdN 134 20.78 1hd3A 62 20.86 b.34.2.1 65802 3c0cA 73 21.09 2drmA 58 21.36 2ak5A 64 22.25 2id0A 644 22.41 1oebA 62 22.42 b.34.2.1 86909 1tg0A 68 22.73 2as9A 210 23.80 1semA 58 24.55 b.34.2.1 24544 3c8iA 141 24.69 1yn8A 59 24.71 1kl9A 182 25.58 a.60.14.1,b.40.4.5 111574,111575 1zx6A 58 25.78 2gncA 60 26.52 1l8bA 190 27.86 d.86.1.1 73683 1x2kA 68 29.20 3ladA 476 30.06 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 1ytbA 180 30.20 d.129.1.1,d.129.1.1 41276,41277 1pczA 191 31.07 d.129.1.1,d.129.1.1 41292,41293 1c9bB 180 31.09 d.129.1.1,d.129.1.1 41216,41217 2g6fX 59 31.11 2qf3A 243 31.40 1eziA 228 31.82 c.68.1.13 34512 2jgbA 195 31.97 2ja9A 175 32.18 1cdwA 179 34.32 d.129.1.1,d.129.1.1 41212,41213 1ipcA 217 35.01 d.86.1.1 71257 1qnaA 200 35.64 d.129.1.1,d.129.1.1 41226,41227 2ba1A 179 36.84 1ng2A 193 37.46 b.34.2.1,b.34.2.1 85660,85661 2ix0A 663 38.94 1gcqA 61 39.27 b.34.2.1 60434 1mp9A 198 39.52 d.129.1.1,d.129.1.1 91385,91386 1eyrA 228 40.76 c.68.1.13 34514 1uj0A 62 41.36 b.34.2.1 99449 1ov3A 138 42.19 b.34.2.1,b.34.2.1 87451,87452 1ruwA 69 42.41 1utiA 58 43.96 b.34.2.1 99962 1avzC 57 44.91 b.34.2.1 24467 1jxmA 301 45.62 b.34.2.1,c.37.1.1 67420,67421 1azgB 67 46.90 b.34.2.1 24471 1wi5A 119 49.19 b.40.4.5 114661 1bu1A 57 51.00 b.34.2.1 24499 2qqrA 118 51.39 1b07A 59 52.55 b.34.2.1 24461 2bzyA 67 53.73 1shfA 59 53.97 b.34.2.1 24462 2fpeA 62 57.43 2r3uA 211 59.63 2sfaA 191 60.96 b.47.1.1 25815 8prkA 287 60.97 b.40.5.1 25395 1ootA 60 61.91 b.34.2.1 93386 1aisA 182 62.61 d.129.1.1,d.129.1.1 41288,41289 1yppA 286 64.39 b.40.5.1 25407 1fx7A 230 64.55 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1wyxA 69 65.79 1lvk 762 65.81 2a28A 54 68.30 1g2bA 62 69.78 b.34.2.1 24488 2nn6H 308 71.02 2ggrA 76 74.16 1k1zA 78 76.09 b.34.2.1 68026 3cp0A 82 78.38 2pn0A 141 78.55 1tuc 63 79.49 1d3uA 181 79.88 d.129.1.1,d.129.1.1 41290,41291 2incC 83 80.31 d.15.12.1 137526 2hdaA 64 80.40 1voqa 90 80.66 1imuA 107 82.05 d.204.1.1 66218 2qcpX 80 83.97 1grj 158 84.47 1gcpA 70 85.36 b.34.2.1 60430 2a08A 60 86.28