# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1at0 145 1.829 2j58A 359 1.921 1at0A 145 2.050 b.86.1.1 28374 2a19A 175 2.322 1d0yA 761 2.396 b.34.3.1,c.37.1.9 24581,32178 3ladA 476 6.102 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 1wi5A 119 6.541 b.40.4.5 114661 2je6I 251 7.008 1w70A 60 8.465 1q46A 175 9.253 a.60.14.1,b.40.4.5 111594,111595 1efnA 59 10.73 b.34.2.1 24465 1vk3A 615 10.81 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 100846,100847,100848,100849 1ckaA 57 11.11 b.34.2.1 24459 2bkdN 134 11.29 1go3E 187 11.45 b.40.4.5,d.230.1.1 83054,83055 2g6fX 59 11.99 1zx6A 58 13.25 1zlmA 58 13.35 2j05A 65 13.53 1wdxA 69 14.73 2ak5A 64 14.74 1yn8A 59 14.95 1eziA 228 15.07 c.68.1.13 34512 1u06A 62 15.42 b.34.2.1 119404 2o31A 67 15.49 2o9sA 67 15.57 2ba1A 179 15.96 2bz8A 58 16.07 1lvk 762 16.32 3c0cA 73 16.37 1y14B 171 16.46 b.40.4.5,d.230.1.1 116323,116324 1tg0A 68 16.69 2as9A 210 16.81 2qqrA 118 16.83 2ja9A 175 17.15 3bzcA 785 17.38 2nn6H 308 17.81 2drmA 58 18.90 1x2kA 68 18.94 1jo8A 58 19.24 b.34.2.1 71774 3c8iA 141 19.53 1oebA 62 19.62 b.34.2.1 86909 1semA 58 19.74 b.34.2.1 24544 2gncA 60 21.16 1kl9A 182 21.50 a.60.14.1,b.40.4.5 111574,111575 1wlpB 138 22.47 b.34.2.1 121010 2idrA 177 23.22 1hd3A 62 24.03 b.34.2.1 65802 2a08A 60 24.45 2j6fA 62 25.65 1bu1A 57 26.44 b.34.2.1 24499 1fcdA 401 26.90 c.3.1.5,c.3.1.5,d.87.1.1 30593,30594,40218 2jmzA 186 27.00 2qf3A 243 29.42 2bzyA 67 30.08 2id0A 644 31.49 1qnaA 200 32.08 d.129.1.1,d.129.1.1 41226,41227 1ytbA 180 32.27 d.129.1.1,d.129.1.1 41276,41277 1avzC 57 34.64 b.34.2.1 24467 2pn0A 141 35.34 1eyrA 228 36.23 c.68.1.13 34514 1shfA 59 38.01 b.34.2.1 24462 1nvtA 287 38.48 c.2.1.7,c.58.1.5 86270,86271 2gy9D 204 39.77 3cp0A 82 40.35 2d1xA 66 40.36 1gcqA 61 40.98 b.34.2.1 60434 2a28A 54 41.10 1a0nB 69 41.73 b.34.2.1 24469 1ruwA 69 41.81 2r3uA 211 42.93 1yppA 286 43.52 b.40.5.1 25407 1e9gA 286 43.72 b.40.5.1 59393 1qlyA 58 44.11 b.34.2.1 24530 1wyxA 69 44.63 1b07A 59 45.12 b.34.2.1 24461 1y0mA 61 45.39 1ywpA 64 45.48 8prkA 287 45.48 b.40.5.1 25395 2fpeA 62 45.93 1thfD 253 46.16 c.1.2.1 28535 1t0qC 86 46.68 d.15.12.1 106222 1fx7A 230 46.72 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1cdwA 179 47.46 d.129.1.1,d.129.1.1 41212,41213 2ggrA 76 48.72 2ix0A 663 48.82 2nloA 302 49.53 1uj0A 62 50.16 b.34.2.1 99449 1azgB 67 50.20 b.34.2.1 24471 1i07A 60 50.65 b.34.2.1 61477 1zmdA 474 50.99 1ej1A 190 51.15 d.86.1.1 40144 1ov3A 138 51.65 b.34.2.1,b.34.2.1 87451,87452 1utiA 58 51.98 b.34.2.1 99962 2hdaA 64 52.48 1c9bB 180 52.49 d.129.1.1,d.129.1.1 41216,41217 2dt5A 211 55.14 a.4.5.38,c.2.1.12 131708,131709 1n0wB 35 55.23 j.97.1.1 79773 2d5cA 263 55.50 1ng2A 193 56.94 b.34.2.1,b.34.2.1 85660,85661 2incC 83 57.57 d.15.12.1 137526 1ootA 60 58.55 b.34.2.1 93386 2aieP 203 58.66 1z1zA 131 61.27 d.323.1.1 124366 1grj 158 61.78 1tygB 87 62.46 d.15.3.2 107455 2jgbA 195 63.12 1mp9A 198 63.39 d.129.1.1,d.129.1.1 91385,91386 2auwA 170 65.43 a.35.1.10,d.331.1.1 127339,127340 2uubD 209 66.70 d.66.1.2 139935 2rb9A 334 66.73 2hs3A 603 74.50 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 136712,136713,136714,136715 2vqeD 209 76.64 1jxmA 301 76.81 b.34.2.1,c.37.1.1 67420,67421 2o88A 58 76.98 1dm9A 133 77.04 d.66.1.3 39560 2otnA 308 82.39 2yxzA 311 85.53 2cghA 268 88.40