# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2a19A	175	3.058		
1at0	145	6.650		
1q46A	175	8.131	a.60.14.1,b.40.4.5	111594,111595
1d0yA	761	9.347	b.34.3.1,c.37.1.9	24581,32178
2j58A	359	11.20		
2idrA	177	12.74		
1at0A	145	13.83	b.86.1.1	28374
2je6I	251	14.83		
1vk3A	615	15.10	d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1	100846,100847,100848,100849
1zeqX	84	15.16		
2j05A	65	18.67		
1ytbA	180	19.10	d.129.1.1,d.129.1.1	41276,41277
1y14B	171	19.29	b.40.4.5,d.230.1.1	116323,116324
1jo8A	58	19.83	b.34.2.1	71774
1go3E	187	19.99	b.40.4.5,d.230.1.1	83054,83055
2id0A	644	22.75		
1qnaA	200	23.59	d.129.1.1,d.129.1.1	41226,41227
1cdwA	179	23.71	d.129.1.1,d.129.1.1	41212,41213
1c9bB	180	24.74	d.129.1.1,d.129.1.1	41216,41217
1ej1A	190	27.02	d.86.1.1	40144
3bzcA	785	27.48		
2j6fA	62	28.30		
1efnA	59	28.40	b.34.2.1	24465
1u06A	62	29.56	b.34.2.1	119404
1mp9A	198	29.63	d.129.1.1,d.129.1.1	91385,91386
1ckaA	57	30.40	b.34.2.1	24459
3ladA	476	31.12	c.3.1.5,c.3.1.5,d.87.1.1	30573,30574,40208
2bz8A	58	31.34		
1zlmA	58	32.05		
2ja9A	175	32.25		
1yfnA	118	32.38	b.136.1.1	123080
2jgbA	195	33.37		
1w70A	60	33.41		
1kl9A	182	35.42	a.60.14.1,b.40.4.5	111574,111575
1pczA	191	35.96	d.129.1.1,d.129.1.1	41292,41293
2qf3A	243	36.14		
1wdxA	69	36.20		
3c8iA	141	36.91		
1aisA	182	37.95	d.129.1.1,d.129.1.1	41288,41289
1ou8A	111	39.71	b.136.1.1	93543
2ix0A	663	39.83		
3c0cA	73	40.19		
1yn8A	59	40.27		
1ywpA	64	40.76		
1fx7A	230	41.13	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
1y0mA	61	42.00		
1wlpB	138	42.38	b.34.2.1	121010
2qqrA	118	42.96		
2d1xA	66	43.28		
1d3uA	181	43.86	d.129.1.1,d.129.1.1	41290,41291
2o31A	67	45.15		
1hd3A	62	45.50	b.34.2.1	65802
2o9sA	67	45.92		
2g6fX	59	46.42		
1oebA	62	46.55	b.34.2.1	86909
2bkdN	134	48.90		
1semA	58	49.96	b.34.2.1	24544
2as9A	210	50.04		
1eyrA	228	52.83	c.68.1.13	34514
1hh2P	344	52.90	b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1	65835,65836,65837,65838
2drmA	58	52.95		
1lvk	762	54.74		
1l8bA	190	55.40	d.86.1.1	73683
1bu1A	57	55.69	b.34.2.1	24499
1ox8A	107	55.92	b.136.1.1	93671
1zx6A	58	57.03		
2fpeA	62	57.35		
1zmdA	474	58.42		
2gncA	60	58.66		
1ov3A	138	59.90	b.34.2.1,b.34.2.1	87451,87452
2ak5A	64	61.58		
1wi5A	119	61.97	b.40.4.5	114661
1ipcA	217	62.37	d.86.1.1	71257
1ruwA	69	63.49		
1x2kA	68	67.22		
3cp0A	82	67.51		
1e9gA	286	68.36	b.40.5.1	59393
1eziA	228	71.44	c.68.1.13	34512
8prkA	287	79.20	b.40.5.1	25395
1ng2A	193	79.27	b.34.2.1,b.34.2.1	85660,85661
1pk6C	129	80.01	b.22.1.1	94803
2a08A	60	80.12		
1tg0A	68	81.33		
2r3uA	211	81.44		
2aieP	203	81.72		
1gcqA	61	84.86	b.34.2.1	60434
2rb9A	334	85.31		
1jxmA	301	87.01	b.34.2.1,c.37.1.1	67420,67421
2gy9D	204	88.96