# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2a19A 175 3.290 1q46A 175 8.144 a.60.14.1,b.40.4.5 111594,111595 2idrA 177 10.86 1at0 145 11.58 1d0yA 761 13.11 b.34.3.1,c.37.1.9 24581,32178 1zeqX 84 15.99 2j05A 65 19.82 1jo8A 58 19.90 b.34.2.1 71774 3bzcA 785 20.85 1ej1A 190 21.92 d.86.1.1 40144 2j58A 359 22.50 1go3E 187 24.46 b.40.4.5,d.230.1.1 83054,83055 2je6I 251 24.62 1efnA 59 25.46 b.34.2.1 24465 1vk3A 615 25.50 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 100846,100847,100848,100849 1u06A 62 25.95 b.34.2.1 119404 1at0A 145 26.89 b.86.1.1 28374 1ytbA 180 27.19 d.129.1.1,d.129.1.1 41276,41277 1w70A 60 28.11 2id0A 644 28.14 1ckaA 57 29.68 b.34.2.1 24459 2bz8A 58 29.90 2jgbA 195 30.33 1zlmA 58 31.20 2j6fA 62 31.60 1cdwA 179 32.32 d.129.1.1,d.129.1.1 41212,41213 1qnaA 200 33.47 d.129.1.1,d.129.1.1 41226,41227 1wdxA 69 34.21 3c0cA 73 34.69 1kl9A 182 34.89 a.60.14.1,b.40.4.5 111574,111575 1y0mA 61 36.29 2as9A 210 36.54 1c9bB 180 36.56 d.129.1.1,d.129.1.1 41216,41217 2o9sA 67 36.74 2o31A 67 37.42 1mp9A 198 37.44 d.129.1.1,d.129.1.1 91385,91386 2ja9A 175 37.88 3c8iA 141 38.05 1oebA 62 38.47 b.34.2.1 86909 1ywpA 64 38.65 2d1xA 66 38.74 1hd3A 62 41.56 b.34.2.1 65802 2bkdN 134 42.58 2g6fX 59 42.64 1l8bA 190 42.67 d.86.1.1 73683 1wlpB 138 43.76 b.34.2.1 121010 1zx6A 58 44.15 2ix0A 663 44.70 1semA 58 44.85 b.34.2.1 24544 1hh2P 344 48.57 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 65835,65836,65837,65838 1fx7A 230 48.94 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2qf3A 243 49.95 2drmA 58 50.25 1yfnA 118 50.69 b.136.1.1 123080 3ladA 476 50.98 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 2ak5A 64 51.59 2gncA 60 53.26 1ipcA 217 53.66 d.86.1.1 71257 1yn8A 59 53.81 1pczA 191 53.98 d.129.1.1,d.129.1.1 41292,41293 2fpeA 62 54.52 1ou8A 111 55.68 b.136.1.1 93543 1eziA 228 56.55 c.68.1.13 34512 1tg0A 68 57.89 1eyrA 228 59.61 c.68.1.13 34514 1aisA 182 60.03 d.129.1.1,d.129.1.1 41288,41289 1y14B 171 60.08 b.40.4.5,d.230.1.1 116323,116324 1x2kA 68 62.71 1d3uA 181 62.89 d.129.1.1,d.129.1.1 41290,41291 1gcqA 61 63.34 b.34.2.1 60434 2gy9D 204 63.38 2uubD 209 64.05 d.66.1.2 139935 1e9gA 286 64.68 b.40.5.1 59393 1pk6C 129 66.73 b.22.1.1 94803 2a08A 60 69.48 1wi5A 119 70.69 b.40.4.5 114661 1jxmA 301 71.31 b.34.2.1,c.37.1.1 67420,67421 1bu1A 57 71.71 b.34.2.1 24499 1ov3A 138 71.83 b.34.2.1,b.34.2.1 87451,87452 1ruwA 69 71.93 8prkA 287 74.42 b.40.5.1 25395 2qcpX 80 77.73 1uj0A 62 78.55 b.34.2.1 99449 1ng2A 193 80.12 b.34.2.1,b.34.2.1 85660,85661 1ox8A 107 85.13 b.136.1.1 93671 1lvk 762 89.35