# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2a19A 175 3.064 1q46A 175 7.554 a.60.14.1,b.40.4.5 111594,111595 1at0 145 11.58 1d0yA 761 13.83 b.34.3.1,c.37.1.9 24581,32178 1zeqX 84 14.52 1jo8A 58 15.54 b.34.2.1 71774 2j05A 65 16.26 2idrA 177 16.78 1efnA 59 20.49 b.34.2.1 24465 2je6I 251 20.54 1vk3A 615 20.69 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 100846,100847,100848,100849 1ckaA 57 21.75 b.34.2.1 24459 1u06A 62 22.15 b.34.2.1 119404 3bzcA 785 22.35 1go3E 187 22.82 b.40.4.5,d.230.1.1 83054,83055 1ej1A 190 23.06 d.86.1.1 40144 1w70A 60 23.09 2j58A 359 23.41 2bz8A 58 23.74 1ytbA 180 25.76 d.129.1.1,d.129.1.1 41276,41277 1zlmA 58 25.79 2j6fA 62 26.86 3c0cA 73 28.98 2id0A 644 29.47 1wdxA 69 30.39 2as9A 210 30.52 1qnaA 200 30.88 d.129.1.1,d.129.1.1 41226,41227 1at0A 145 31.21 b.86.1.1 28374 1oebA 62 31.62 b.34.2.1 86909 1y0mA 61 31.62 1ywpA 64 31.75 1kl9A 182 31.95 a.60.14.1,b.40.4.5 111574,111575 1cdwA 179 32.16 d.129.1.1,d.129.1.1 41212,41213 2o9sA 67 32.41 2o31A 67 32.77 2d1xA 66 33.03 1hd3A 62 34.42 b.34.2.1 65802 3c8iA 141 34.44 1mp9A 198 34.60 d.129.1.1,d.129.1.1 91385,91386 2ja9A 175 35.61 1c9bB 180 35.62 d.129.1.1,d.129.1.1 41216,41217 1semA 58 36.13 b.34.2.1 24544 3ladA 476 36.53 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 2g6fX 59 37.19 2jgbA 195 37.45 1zx6A 58 38.20 1wlpB 138 38.56 b.34.2.1 121010 2drmA 58 38.57 2qf3A 243 39.29 2ak5A 64 39.74 2bkdN 134 42.33 1yn8A 59 43.18 2gncA 60 43.62 1y14B 171 45.58 b.40.4.5,d.230.1.1 116323,116324 1hh2P 344 47.74 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 65835,65836,65837,65838 2ix0A 663 49.61 1l8bA 190 50.72 d.86.1.1 73683 1x2kA 68 51.29 1tg0A 68 51.71 1pczA 191 51.80 d.129.1.1,d.129.1.1 41292,41293 1ruwA 69 52.52 1aisA 182 53.33 d.129.1.1,d.129.1.1 41288,41289 1ov3A 138 54.70 b.34.2.1,b.34.2.1 87451,87452 2fpeA 62 56.87 1bu1A 57 57.16 b.34.2.1 24499 1ipcA 217 57.90 d.86.1.1 71257 1fx7A 230 58.48 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1e9gA 286 58.82 b.40.5.1 59393 1d3uA 181 58.99 d.129.1.1,d.129.1.1 41290,41291 1gcqA 61 59.59 b.34.2.1 60434 1eyrA 228 60.55 c.68.1.13 34514 2a08A 60 60.77 8prkA 287 64.74 b.40.5.1 25395 1eziA 228 65.27 c.68.1.13 34512 1yfnA 118 66.85 b.136.1.1 123080 1wi5A 119 68.36 b.40.4.5 114661 1utiA 58 69.09 b.34.2.1 99962 2qcpX 80 71.17 1zmdA 474 71.47 2gy9D 204 71.88 1uj0A 62 73.42 b.34.2.1 99449 1ou8A 111 73.97 b.136.1.1 93543 2uubD 209 74.50 d.66.1.2 139935 1b07A 59 74.95 b.34.2.1 24461 1ng2A 193 76.10 b.34.2.1,b.34.2.1 85660,85661 1shfA 59 77.10 b.34.2.1 24462 1jxmA 301 80.12 b.34.2.1,c.37.1.1 67420,67421 2p6yA 142 80.92 2dt5A 211 83.29 a.4.5.38,c.2.1.12 131708,131709 2aieP 203 85.52 1lvk 762 90.00