# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1d0yA	761	3.840	b.34.3.1,c.37.1.9	24581,32178
2a19A	175	5.715		
1go3E	187	10.55	b.40.4.5,d.230.1.1	83054,83055
1y14B	171	10.92	b.40.4.5,d.230.1.1	116323,116324
1wi5A	119	12.18	b.40.4.5	114661
2dt5A	211	12.99	a.4.5.38,c.2.1.12	131708,131709
1ckaA	57	20.19	b.34.2.1	24459
2nn6H	308	20.97		
1at0	145	21.08		
2j58A	359	22.39		
1q46A	175	22.43	a.60.14.1,b.40.4.5	111594,111595
1vk3A	615	22.44	d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1	100846,100847,100848,100849
1lvk	762	23.59		
2j05A	65	23.75		
2j6fA	62	24.10		
1u06A	62	27.09	b.34.2.1	119404
1at0A	145	30.33	b.86.1.1	28374
2bz8A	58	31.24		
3c8iA	141	34.30		
1w70A	60	36.21		
3cp0A	82	36.60		
1voqa	90	38.58		
3ladA	476	38.86	c.3.1.5,c.3.1.5,d.87.1.1	30573,30574,40208
2rk3A	197	39.98		
1efnA	59	43.62	b.34.2.1	24465
1hd3A	62	43.73	b.34.2.1	65802
1l4sA	112	44.28	d.204.1.1	77693
1ej1A	190	44.82	d.86.1.1	40144
2bkdN	134	45.81		
2gy9D	204	46.88		
1zlmA	58	48.45		
2je6I	251	49.87		
1imuA	107	52.01	d.204.1.1	66218
1jo8A	58	52.16	b.34.2.1	71774
3bzcA	785	53.05		
1xcbA	211	56.06	a.4.5.38,c.2.1.12	109552,109553
2rb9A	334	56.66		
1oebA	62	57.68	b.34.2.1	86909
3c0cA	73	59.21		
1yn8A	59	59.36		
1ipcA	217	62.25	d.86.1.1	71257
1p5fA	189	64.96	c.23.16.2	94142
2uubD	209	66.61	d.66.1.2	139935
2d1xA	66	67.76		
2g6fX	59	67.97		
2vknA	70	69.64		
1jxmA	301	69.86	b.34.2.1,c.37.1.1	67420,67421
2drmA	58	71.12		
1semA	58	71.15	b.34.2.1	24544
2vqeD	209	71.16		
2qqrA	118	72.68		
2a08A	60	74.54		
1zx6A	58	74.72		
1mp9A	198	75.43	d.129.1.1,d.129.1.1	91385,91386
1d3uA	181	75.50	d.129.1.1,d.129.1.1	41290,41291
1pczA	191	75.86	d.129.1.1,d.129.1.1	41292,41293
1zeqX	84	76.80		
1wlpB	138	77.77	b.34.2.1	121010
3cneA	175	77.95		
2gncA	60	81.61		
2o9sA	67	82.01		
1qlyA	58	82.54	b.34.2.1	24530
2o31A	67	82.93		
2o4aA	93	84.94		
2bzyA	67	85.52		
1x2kA	68	86.01		
2phcB	225	88.01		
1n3gA	113	88.02	d.204.1.1	79962