# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2a19A	175	2.965		
1d0yA	761	3.804	b.34.3.1,c.37.1.9	24581,32178
1at0	145	6.795		
1at0A	145	6.899	b.86.1.1	28374
2j58A	359	7.395		
2je6I	251	8.449		
1q46A	175	10.67	a.60.14.1,b.40.4.5	111594,111595
1vk3A	615	10.93	d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1	100846,100847,100848,100849
2idrA	177	11.91		
1y14B	171	19.00	b.40.4.5,d.230.1.1	116323,116324
3bzcA	785	19.34		
2j05A	65	19.90		
1go3E	187	21.04	b.40.4.5,d.230.1.1	83054,83055
2id0A	644	24.58		
1ytbA	180	25.44	d.129.1.1,d.129.1.1	41276,41277
1ej1A	190	27.46	d.86.1.1	40144
1w70A	60	27.55		
1eyrA	228	27.75	c.68.1.13	34514
3c8iA	141	28.81		
1qnaA	200	29.53	d.129.1.1,d.129.1.1	41226,41227
2bz8A	58	29.66		
1lvk	762	31.01		
1eziA	228	31.29	c.68.1.13	34512
1efnA	59	31.75	b.34.2.1	24465
1u06A	62	32.66	b.34.2.1	119404
1zx6A	58	33.98		
1zlmA	58	34.02		
2ja9A	175	34.38		
1kl9A	182	34.64	a.60.14.1,b.40.4.5	111574,111575
2as9A	210	35.02		
1ckaA	57	36.09	b.34.2.1	24459
1jo8A	58	36.21	b.34.2.1	71774
1zeqX	84	36.47		
2d1xA	66	39.64		
2o31A	67	39.95		
2gy9D	204	42.62		
2j6fA	62	42.76		
2o9sA	67	42.97		
3c0cA	73	43.21		
1tg0A	68	43.61		
1wdxA	69	45.34		
2qf3A	243	46.73		
1wlpB	138	47.26	b.34.2.1	121010
3ladA	476	47.28	c.3.1.5,c.3.1.5,d.87.1.1	30573,30574,40208
2ix0A	663	47.73		
1mp9A	198	49.54	d.129.1.1,d.129.1.1	91385,91386
2ak5A	64	49.60		
1yn8A	59	50.48		
2g6fX	59	52.53		
2aieP	203	55.04		
1hd3A	62	55.44	b.34.2.1	65802
1cdwA	179	55.72	d.129.1.1,d.129.1.1	41212,41213
2gncA	60	57.40		
2bkdN	134	58.03		
2ba1A	179	58.37		
1y0mA	61	58.59		
2qqrA	118	62.33		
1fx7A	230	63.02	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2jgbA	195	63.05		
1l8bA	190	63.79	d.86.1.1	73683
2vqeD	209	65.19		
2uubD	209	65.32	d.66.1.2	139935
1mp4A	292	65.39	c.68.1.6	79376
1ipcA	217	67.11	d.86.1.1	71257
1ng2A	193	69.44	b.34.2.1,b.34.2.1	85660,85661
1ou8A	111	69.64	b.136.1.1	93543
1ywpA	64	70.47		
1oebA	62	71.93	b.34.2.1	86909
2hs3A	603	72.14	d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1	136712,136713,136714,136715
2i00A	406	72.24		
1zpsA	138	72.51	b.168.1.1	125473
1c9bB	180	73.66	d.129.1.1,d.129.1.1	41216,41217
2dt5A	211	74.62	a.4.5.38,c.2.1.12	131708,131709
1pczA	191	74.91	d.129.1.1,d.129.1.1	41292,41293
2fpeA	62	75.38		
1ov3A	138	76.07	b.34.2.1,b.34.2.1	87451,87452
1dm9A	133	77.49	d.66.1.3	39560
1zmdA	474	77.87		
2drmA	58	78.10		
1e9gA	286	78.65	b.40.5.1	59393
2pn0A	141	79.70		
8prkA	287	83.61	b.40.5.1	25395
2vh1A	220	84.20		
1imuA	107	85.68	d.204.1.1	66218
2a08A	60	86.61		
2bzyA	67	87.50