# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2id0A 644 0.6412 1at0A 145 1.264 b.86.1.1 28374 1at0 145 2.056 2a19A 175 2.785 1go3E 187 3.419 b.40.4.5,d.230.1.1 83054,83055 2je6I 251 4.471 1y14B 171 5.480 b.40.4.5,d.230.1.1 116323,116324 2j58A 359 6.978 1mkaA 171 7.070 d.38.1.2 38543 3bzcA 785 7.627 2idrA 177 7.773 2r3uA 211 7.848 1zeqX 84 7.928 2hs3A 603 8.087 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 136712,136713,136714,136715 1o6gA 710 9.182 b.69.7.1,c.69.1.4 81087,81088 2o11A 407 9.532 2j05A 65 10.49 2ea7A 434 11.62 1mp4A 292 12.37 c.68.1.6 79376 2jbmA 299 12.48 2ob3A 330 12.60 1vk3A 615 12.86 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 100846,100847,100848,100849 2jgbA 195 13.65 1wdxA 69 13.72 1d0yA 761 14.60 b.34.3.1,c.37.1.9 24581,32178 1eziA 228 14.73 c.68.1.13 34512 2gncA 60 15.40 1w70A 60 15.68 1pk6C 129 16.29 b.22.1.1 94803 1u06A 62 16.81 b.34.2.1 119404 2bz8A 58 17.57 2nujA 163 17.63 d.38.1.1 138608 1zlmA 58 17.91 1zu0A 529 18.19 2qf3A 243 18.59 2ja9A 175 18.97 2drmA 58 19.17 1ov3A 138 21.11 b.34.2.1,b.34.2.1 87451,87452 1jo8A 58 21.52 b.34.2.1 71774 1vcbC 160 22.32 b.3.3.1 22535 2o31A 67 22.98 1wlpB 138 23.24 b.34.2.1 121010 1c9bB 180 24.01 d.129.1.1,d.129.1.1 41216,41217 2dt4A 143 24.61 1zx6A 58 24.87 1mp9A 198 25.10 d.129.1.1,d.129.1.1 91385,91386 2bkdN 134 25.43 3c8iA 141 26.43 2o9sA 67 27.25 1efnA 59 27.27 b.34.2.1 24465 2j6fA 62 27.61 2ak5A 64 27.69 2d1xA 66 28.20 1semA 58 28.75 b.34.2.1 24544 1fecA 490 28.86 c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 1qxoA 388 29.59 d.258.1.1 96539 2qcpX 80 30.13 1hd3A 62 30.31 b.34.2.1 65802 1k07A 263 30.93 d.157.1.1 77218 1yfnA 118 31.12 b.136.1.1 123080 3bcwA 123 31.14 2g6fX 59 32.78 1sotA 320 32.81 b.36.1.4,b.47.1.1 105852,105853 2gqpA 236 33.41 d.122.1.1 135513 2vqeQ 105 34.11 1oebA 62 34.44 b.34.2.1 86909 1ytbA 180 34.73 d.129.1.1,d.129.1.1 41276,41277 1rwtA 232 34.97 f.43.1.1 97992 1te0A 318 35.38 b.36.1.4,b.47.1.1 112400,112401 1o7tA 309 35.48 c.94.1.1 86645 1l8bA 190 36.30 d.86.1.1 73683 1n5nA 180 36.32 d.167.1.1 85336 1t0qC 86 39.08 d.15.12.1 106222 1v3yA 192 39.19 d.167.1.1 113508 1gk9B 557 39.60 1k7cA 233 39.66 c.23.10.4 68267 2yx1A 336 40.35 1kl9A 182 41.46 a.60.14.1,b.40.4.5 111574,111575 2o8lA 274 44.06 b.47.1.1 138932 2nq5A 755 44.63 1ej1A 190 44.89 d.86.1.1 40144 1lvk 762 45.72 1ao0A 459 46.03 c.61.1.1,d.153.1.1 34049,41816 1nhp 447 46.18 2qqrA 118 47.01 3c3pA 210 47.18 2ix0A 663 47.32 1k8tA 510 48.35 e.41.1.1 68316 1l4sA 112 48.84 d.204.1.1 77693 2o0yA 260 48.97 1iwlA 182 50.31 b.125.1.1 83757 1ywpA 64 51.77 1pczA 191 53.10 d.129.1.1,d.129.1.1 41292,41293 1fjgQ 105 53.12 b.40.4.5 25352 1m7vA 363 53.53 d.174.1.1 78748 2pq8A 278 54.57 1y0mA 61 55.53 1ou8A 111 56.01 b.136.1.1 93543 2qxxA 190 56.37 1ofzA 312 56.43 b.68.8.1 86978 1lv7A 257 56.71 c.37.1.20 78232 1q46A 175 57.25 a.60.14.1,b.40.4.5 111594,111595 1ng2A 193 57.91 b.34.2.1,b.34.2.1 85660,85661 1utiA 58 58.01 b.34.2.1 99962 2os0A 188 58.80 2heuA 401 59.47 3cj1A 456 59.56 1dm9A 133 59.76 d.66.1.3 39560 1o7iA 119 60.09 b.40.4.3 86642 1mjgM 729 60.33 e.26.1.3 79204 2a08A 60 60.40 1cdwA 179 60.69 d.129.1.1,d.129.1.1 41212,41213 1jmcA 246 62.21 b.40.4.3,b.40.4.3 25300,25301 1q1lA 401 63.37 d.258.1.1 95591 1voqa 90 64.40 1ruwA 69 66.85 2aieP 203 67.41 1gcqA 61 69.37 b.34.2.1 60434 1i78A 297 69.53 f.4.4.1 66046 1ox8A 107 69.62 b.136.1.1 93671 1b7yB 785 69.96 a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,b.153.1.1 16301,16302,25312,39311,40780,41456 1uylA 236 70.11 d.122.1.1 108147 1qhuA 460 70.57 b.66.1.1,b.66.1.1 27530,27531 1bs4A 168 70.71 d.167.1.1 42287 2hxdA 204 72.36 1ebdA 455 72.55 c.3.1.5,c.3.1.5,d.87.1.1 30577,30578,40210 2vqeD 209 73.09 1fx7A 230 74.29 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1yo1A 260 74.41 2a28A 54 74.83 2g2nA 114 75.26 1sxvA 172 76.18 1bu1A 57 76.97 b.34.2.1 24499 1hh2P 344 77.90 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 65835,65836,65837,65838 1qnaA 200 78.30 d.129.1.1,d.129.1.1 41226,41227 1twlA 186 80.30 b.40.5.1 112764 2fpeA 62 81.15 1gqzA 274 81.30 d.21.1.1,d.21.1.1 83311,83312 2rb9A 334 82.13 1pk6B 132 82.76 b.22.1.1 94802 2sfaA 191 83.71 b.47.1.1 25815 2qa9E 185 86.53 1qbgA 272 87.08 c.23.5.3 31227 2p8bA 369 87.94 1qlyA 58 88.91 b.34.2.1 24530 2pn0A 141 89.44