# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2a19A	175	3.685		
1d0yA	761	6.596	b.34.3.1,c.37.1.9	24581,32178
1q46A	175	9.366	a.60.14.1,b.40.4.5	111594,111595
1at0	145	10.26		
1at0A	145	11.87	b.86.1.1	28374
1go3E	187	15.53	b.40.4.5,d.230.1.1	83054,83055
2j58A	359	15.68		
2idrA	177	16.69		
1zeqX	84	18.08		
1vk3A	615	20.37	d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1	100846,100847,100848,100849
1eziA	228	21.54	c.68.1.13	34512
3bzcA	785	21.61		
1ytbA	180	22.79	d.129.1.1,d.129.1.1	41276,41277
2bz8A	58	22.91		
1qnaA	200	23.27	d.129.1.1,d.129.1.1	41226,41227
2j05A	65	23.33		
2id0A	644	23.39		
2as9A	210	24.31		
1w70A	60	26.02		
1y14B	171	26.97	b.40.4.5,d.230.1.1	116323,116324
1cdwA	179	27.32	d.129.1.1,d.129.1.1	41212,41213
2qf3A	243	29.27		
1u06A	62	29.57	b.34.2.1	119404
1zlmA	58	30.24		
2d1xA	66	31.02		
1jo8A	58	31.32	b.34.2.1	71774
1zx6A	58	34.16		
3ladA	476	34.17	c.3.1.5,c.3.1.5,d.87.1.1	30573,30574,40208
3c0cA	73	34.42		
1efnA	59	34.63	b.34.2.1	24465
3c8iA	141	36.07		
2je6I	251	37.44		
1eyrA	228	37.70	c.68.1.13	34514
1c9bB	180	38.91	d.129.1.1,d.129.1.1	41216,41217
2o31A	67	39.92		
1ej1A	190	40.77	d.86.1.1	40144
1mp9A	198	41.60	d.129.1.1,d.129.1.1	91385,91386
2bkdN	134	42.28		
2gy9D	204	42.51		
1wlpB	138	42.54	b.34.2.1	121010
2j6fA	62	42.78		
1ckaA	57	43.79	b.34.2.1	24459
2o9sA	67	44.54		
1hd3A	62	46.02	b.34.2.1	65802
2ak5A	64	48.66		
1tg0A	68	50.22		
1y0mA	61	52.17		
2ix0A	663	52.82		
1yn8A	59	53.58		
1wdxA	69	54.32		
2vqeD	209	55.50		
1kl9A	182	56.59	a.60.14.1,b.40.4.5	111574,111575
1e9gA	286	60.23	b.40.5.1	59393
8prkA	287	61.21	b.40.5.1	25395
2gncA	60	62.14		
2g6fX	59	62.82		
2ja9A	175	63.41		
2aieP	203	64.27		
2uubD	209	64.35	d.66.1.2	139935
2jgbA	195	64.37		
1ywpA	64	64.62		
1pczA	191	64.86	d.129.1.1,d.129.1.1	41292,41293
1aisA	182	65.50	d.129.1.1,d.129.1.1	41288,41289
1zmdA	474	67.23		
1lvk	762	68.73		
1dm9A	133	70.51	d.66.1.3	39560
1ng2A	193	70.84	b.34.2.1,b.34.2.1	85660,85661
2ba1A	179	71.48		
1oebA	62	72.88	b.34.2.1	86909
2r3uA	211	73.37		
1mp4A	292	73.54	c.68.1.6	79376
1x2kA	68	73.69		
1d3uA	181	74.22	d.129.1.1,d.129.1.1	41290,41291
2bzyA	67	74.85		
1fx7A	230	74.93	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2drmA	58	76.78		
2q3pA	112	80.24	d.58.4.4	139798
1yppA	286	80.83	b.40.5.1	25407
2qcpX	80	82.27		
2sfaA	191	82.52	b.47.1.1	25815
1imuA	107	82.52	d.204.1.1	66218
2fpeA	62	83.72		
2a08A	60	86.30