# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2a19A	175	4.947		
1q46A	175	10.39	a.60.14.1,b.40.4.5	111594,111595
1d0yA	761	15.26	b.34.3.1,c.37.1.9	24581,32178
1go3E	187	16.90	b.40.4.5,d.230.1.1	83054,83055
1at0	145	20.96		
2as9A	210	20.96		
2idrA	177	21.69		
1vk3A	615	23.82	d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1	100846,100847,100848,100849
2j05A	65	25.63		
1u06A	62	26.83	b.34.2.1	119404
2bz8A	58	28.14		
2nn6H	308	28.14		
1w70A	60	28.24		
2j58A	359	29.42		
1zlmA	58	29.77		
1efnA	59	30.00	b.34.2.1	24465
1jo8A	58	30.79	b.34.2.1	71774
1zeqX	84	31.02		
3c0cA	73	33.29		
2bkdN	134	36.07		
1ckaA	57	36.18	b.34.2.1	24459
1eyrA	228	36.51	c.68.1.13	34514
2o31A	67	37.65		
2d1xA	66	37.90		
1y0mA	61	38.04		
1wlpB	138	38.43	b.34.2.1	121010
1ej1A	190	38.49	d.86.1.1	40144
2je6I	251	38.71		
2j6fA	62	39.18		
1y14B	171	39.97	b.40.4.5,d.230.1.1	116323,116324
2o9sA	67	41.31		
2id0A	644	43.14		
1wi5A	119	45.15	b.40.4.5	114661
2g6fX	59	46.39		
1hd3A	62	48.59	b.34.2.1	65802
1ywpA	64	48.76		
1x2kA	68	50.30		
2qf3A	243	51.33		
2gncA	60	51.74		
2drmA	58	52.15		
1zx6A	58	52.18		
1yn8A	59	53.31		
3bzcA	785	54.07		
1wdxA	69	54.19		
1kl9A	182	55.56	a.60.14.1,b.40.4.5	111574,111575
2jgbA	195	57.03		
1ytbA	180	57.64	d.129.1.1,d.129.1.1	41276,41277
1qnaA	200	58.47	d.129.1.1,d.129.1.1	41226,41227
1pczA	191	61.54	d.129.1.1,d.129.1.1	41292,41293
2ak5A	64	61.73		
1oebA	62	62.64	b.34.2.1	86909
2ba1A	179	63.00		
1pk6C	129	64.47	b.22.1.1	94803
3c8iA	141	65.54		
2gy9D	204	66.10		
1semA	58	66.20	b.34.2.1	24544
1ox8A	107	66.37	b.136.1.1	93671
1tg0A	68	66.89		
1ou8A	111	73.28	b.136.1.1	93543
1cdwA	179	77.79	d.129.1.1,d.129.1.1	41212,41213
2dt5A	211	78.99	a.4.5.38,c.2.1.12	131708,131709
1fx7A	230	78.99	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
1l8bA	190	79.41	d.86.1.1	73683
1c9bB	180	80.42	d.129.1.1,d.129.1.1	41216,41217
1ng2A	193	80.54	b.34.2.1,b.34.2.1	85660,85661
2a08A	60	84.15		
1mv3A	213	88.09	b.34.2.1	91468
1yppA	286	88.39	b.40.5.1	25407
2dt4A	143	88.70		
1yfnA	118	89.12	b.136.1.1	123080