# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2a19A	175	3.596		
1at0	145	5.075		
1d0yA	761	7.704	b.34.3.1,c.37.1.9	24581,32178
1at0A	145	7.968	b.86.1.1	28374
2j58A	359	11.48		
2idrA	177	11.97		
1vk3A	615	12.33	d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1	100846,100847,100848,100849
1q46A	175	12.40	a.60.14.1,b.40.4.5	111594,111595
2bz8A	58	17.04		
3ladA	476	17.97	c.3.1.5,c.3.1.5,d.87.1.1	30573,30574,40208
2as9A	210	18.31		
2j05A	65	20.52		
1w70A	60	21.19		
1ej1A	190	22.37	d.86.1.1	40144
1go3E	187	22.65	b.40.4.5,d.230.1.1	83054,83055
1zeqX	84	23.81		
1ckaA	57	24.57	b.34.2.1	24459
1u06A	62	25.28	b.34.2.1	119404
1wi5A	119	26.26	b.40.4.5	114661
1jo8A	58	26.68	b.34.2.1	71774
1y0mA	61	27.51		
3c0cA	73	27.60		
1yppA	286	28.77	b.40.5.1	25407
2o31A	67	29.61		
2j6fA	62	29.76		
1e9gA	286	30.18	b.40.5.1	59393
2nn6H	308	30.67		
1efnA	59	30.84	b.34.2.1	24465
2qf3A	243	31.28		
2g6fX	59	31.77		
1zlmA	58	33.09		
8prkA	287	33.37	b.40.5.1	25395
2o9sA	67	33.73		
2drmA	58	34.26		
2je6I	251	35.71		
2gy9D	204	36.16		
1wlpB	138	36.86	b.34.2.1	121010
2ak5A	64	38.00		
1l8bA	190	38.35	d.86.1.1	73683
1qnaA	200	39.16	d.129.1.1,d.129.1.1	41226,41227
3c8iA	141	40.14		
1wdxA	69	40.26		
1yn8A	59	41.81		
2bkdN	134	42.09		
1zx6A	58	42.70		
1ipcA	217	42.86	d.86.1.1	71257
2d1xA	66	42.92		
1ywpA	64	44.26		
1eyrA	228	44.90	c.68.1.13	34514
1z1zA	131	46.50	d.323.1.1	124366
2sfaA	191	46.83	b.47.1.1	25815
2jgbA	195	46.89		
2uubD	209	48.34	d.66.1.2	139935
1eziA	228	48.54	c.68.1.13	34512
1zmdA	474	51.70		
1oebA	62	52.13	b.34.2.1	86909
1semA	58	52.44	b.34.2.1	24544
1hd3A	62	54.40	b.34.2.1	65802
1fx7A	230	55.00	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2ba1A	179	55.78		
1x2kA	68	56.42		
2a08A	60	57.35		
2id0A	644	57.69		
1y14B	171	58.58	b.40.4.5,d.230.1.1	116323,116324
2gncA	60	59.02		
2dt5A	211	59.14	a.4.5.38,c.2.1.12	131708,131709
2yxzA	311	59.18		
3bzcA	785	63.46		
1lvk	762	63.86		
1tg0A	68	67.42		
2pn0A	141	67.51		
1ng2A	193	67.75	b.34.2.1,b.34.2.1	85660,85661
2bzyA	67	69.02		
2r3uA	211	69.49		
1ytbA	180	70.88	d.129.1.1,d.129.1.1	41276,41277
2incC	83	74.70	d.15.12.1	137526
1kl9A	182	76.56	a.60.14.1,b.40.4.5	111574,111575
2vqeD	209	77.81		
2aieP	203	78.99		
1k7cA	233	80.45	c.23.10.4	68267
2qqrA	118	83.12		
2q3pA	112	84.84	d.58.4.4	139798
1cdwA	179	85.70	d.129.1.1,d.129.1.1	41212,41213
2z30B	65	85.72		
2d5cA	263	89.70