# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2a19A 175 3.949 1d0yA 761 5.563 b.34.3.1,c.37.1.9 24581,32178 1at0 145 7.041 1vk3A 615 8.522 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 100846,100847,100848,100849 2j58A 359 10.32 1q46A 175 13.48 a.60.14.1,b.40.4.5 111594,111595 1zeqX 84 16.96 1efnA 59 17.48 b.34.2.1 24465 2j05A 65 17.88 3bzcA 785 18.42 2o31A 67 19.40 2o9sA 67 19.49 1w70A 60 20.01 2as9A 210 20.49 2idrA 177 20.54 1u06A 62 20.56 b.34.2.1 119404 1ckaA 57 21.44 b.34.2.1 24459 3c0cA 73 21.56 1at0A 145 21.67 b.86.1.1 28374 1jo8A 58 22.30 b.34.2.1 71774 2nn6H 308 22.56 1go3E 187 22.91 b.40.4.5,d.230.1.1 83054,83055 3c8iA 141 24.39 1wlpB 138 24.56 b.34.2.1 121010 1yn8A 59 25.42 1zlmA 58 25.78 2j6fA 62 26.69 2je6I 251 27.06 3ladA 476 28.76 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 2g6fX 59 29.57 1wdxA 69 29.63 8prkA 287 30.08 b.40.5.1 25395 1e9gA 286 32.61 b.40.5.1 59393 1wi5A 119 32.66 b.40.4.5 114661 2bkdN 134 32.72 2bz8A 58 33.19 1hd3A 62 33.20 b.34.2.1 65802 1yppA 286 33.60 b.40.5.1 25407 1qnaA 200 33.79 d.129.1.1,d.129.1.1 41226,41227 1semA 58 33.86 b.34.2.1 24544 1ej1A 190 34.03 d.86.1.1 40144 2qf3A 243 34.07 1zx6A 58 34.44 1y14B 171 34.60 b.40.4.5,d.230.1.1 116323,116324 1oebA 62 34.78 b.34.2.1 86909 1tg0A 68 35.37 1y0mA 61 36.10 2d1xA 66 37.46 2drmA 58 39.90 2gncA 60 40.07 1cdwA 179 42.20 d.129.1.1,d.129.1.1 41212,41213 2yxzA 311 43.98 2gy9D 204 44.57 2a08A 60 45.23 1ywpA 64 45.25 1lvk 762 46.29 1azgB 67 47.14 b.34.2.1 24471 2qcpX 80 47.82 1ytbA 180 48.49 d.129.1.1,d.129.1.1 41276,41277 2id0A 644 49.97 1c9bB 180 50.52 d.129.1.1,d.129.1.1 41216,41217 1tygB 87 51.60 d.15.3.2 107455 1fx7A 230 54.66 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1wyxA 69 55.06 1kl9A 182 56.20 a.60.14.1,b.40.4.5 111574,111575 1shfA 59 57.51 b.34.2.1 24462 1x2kA 68 58.76 2ja9A 175 58.86 2ak5A 64 59.29 2jgbA 195 59.80 1l8bA 190 63.41 d.86.1.1 73683 2ba1A 179 63.48 1a0nB 69 64.08 b.34.2.1 24469 2hs3A 603 64.14 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 136712,136713,136714,136715 1ng2A 193 64.65 b.34.2.1,b.34.2.1 85660,85661 2q3pA 112 65.00 d.58.4.4 139798 1bu1A 57 65.29 b.34.2.1 24499 1z1zA 131 65.29 d.323.1.1 124366 3cp0A 82 66.47 1eyrA 228 67.03 c.68.1.13 34514 1ipcA 217 69.31 d.86.1.1 71257 2r3uA 211 72.24 1mp9A 198 74.35 d.129.1.1,d.129.1.1 91385,91386 1eziA 228 74.43 c.68.1.13 34512 1zmdA 474 75.36 1dm9A 133 77.71 d.66.1.3 39560 2aieP 203 77.73 2dt5A 211 78.22 a.4.5.38,c.2.1.12 131708,131709 1avzC 57 78.30 b.34.2.1 24467 1jxmA 301 79.45 b.34.2.1,c.37.1.1 67420,67421 1gcqA 61 79.76 b.34.2.1 60434 2ix0A 663 80.23 2bzyA 67 80.98 1uj0A 62 80.99 b.34.2.1 99449 2pn0A 141 81.47 1mp4A 292 86.95 c.68.1.6 79376 1b07A 59 87.88 b.34.2.1 24461 1nvtA 287 89.27 c.2.1.7,c.58.1.5 86270,86271