# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1go3E	187	1.545	b.40.4.5,d.230.1.1	83054,83055
1vk3A	615	1.738	d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1	100846,100847,100848,100849
1q46A	175	7.866	a.60.14.1,b.40.4.5	111594,111595
2hs3A	603	11.96	d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1	136712,136713,136714,136715
2a19A	175	12.17		
2nn6H	308	15.18		
1d0yA	761	15.61	b.34.3.1,c.37.1.9	24581,32178
1t9hA	307	15.80	b.40.4.5,c.37.1.8	112358,112359
1at0	145	21.38		
2dt5A	211	22.96	a.4.5.38,c.2.1.12	131708,131709
1at0A	145	24.62	b.86.1.1	28374
2je6I	251	25.47		
3bzcA	785	26.05		
1yfnA	118	28.22	b.136.1.1	123080
1gceA	364	31.65	e.3.1.1	42738
2j05A	65	31.71		
1d0hA	469	33.30	b.29.1.6,b.42.4.2	24265,25610
1wi5A	119	41.26	b.40.4.5	114661
1a62	130	43.05		
1efnA	59	44.60	b.34.2.1	24465
2rb9A	334	48.23		
1ox8A	107	49.37	b.136.1.1	93671
1diwA	441	52.13	b.29.1.6,b.42.4.2	24264,25609
2bkdN	134	54.17		
1ou8A	111	57.21	b.136.1.1	93543
3ladA	476	59.10	c.3.1.5,c.3.1.5,d.87.1.1	30573,30574,40208
1a41A	234	59.95	d.163.1.2	42174
1zlmA	58	62.86		
1jo8A	58	63.03	b.34.2.1	71774
2yxzA	311	64.13		
1jxmA	301	64.47	b.34.2.1,c.37.1.1	67420,67421
1ckaA	57	65.20	b.34.2.1	24459
2gy9D	204	69.07		
1fx7A	230	70.33	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2o9sA	67	71.57		
1zkjA	359	73.49		
2ba1A	179	76.25		
1pczA	191	82.56	d.129.1.1,d.129.1.1	41292,41293
1kjwA	295	86.20	b.34.2.1,c.37.1.1	68643,68644
2inuA	410	87.59