# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2a19A	175	5.858		
1at0	145	12.02		
2nn6H	308	13.43		
1q46A	175	13.75	a.60.14.1,b.40.4.5	111594,111595
1ej1A	190	14.00	d.86.1.1	40144
1go3E	187	14.75	b.40.4.5,d.230.1.1	83054,83055
2je6I	251	17.59		
1vk3A	615	20.23	d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1	100846,100847,100848,100849
2j05A	65	21.63		
1l8bA	190	25.01	d.86.1.1	73683
1ipcA	217	27.95	d.86.1.1	71257
1at0A	145	28.84	b.86.1.1	28374
1efnA	59	32.97	b.34.2.1	24465
1wdxA	69	36.84		
1jo8A	58	39.58	b.34.2.1	71774
2idrA	177	40.61		
2dt5A	211	41.96	a.4.5.38,c.2.1.12	131708,131709
1zlmA	58	44.20		
2j6fA	62	48.09		
2j58A	359	49.42		
1w70A	60	49.46		
2jgbA	195	49.91		
2g6fX	59	51.07		
1tg0A	68	52.11		
1y14B	171	52.26	b.40.4.5,d.230.1.1	116323,116324
1ckaA	57	56.25	b.34.2.1	24459
2bkdN	134	56.41		
1u06A	62	56.49	b.34.2.1	119404
2o9sA	67	56.55		
2fpeA	62	56.78		
3c0cA	73	57.08		
1gceA	364	58.06	e.3.1.1	42738
3c8iA	141	58.39		
1eziA	228	58.53	c.68.1.13	34512
1zuyA	58	58.55		
1wi5A	119	60.61	b.40.4.5	114661
1bu1A	57	60.69	b.34.2.1	24499
2phcB	225	60.71		
2bz8A	58	62.49		
1xv2A	237	64.64	d.290.1.1	116076
1yn8A	59	64.65		
2o31A	67	65.90		
1y0mA	61	67.71		
1ywpA	64	73.14		
2ja9A	175	76.65		
2rk3A	197	77.38		
1zx6A	58	77.77		
2gncA	60	79.04		
1imuA	107	79.33	d.204.1.1	66218
2p6yA	142	80.37		
1hd3A	62	83.51	b.34.2.1	65802
1avzC	57	84.79	b.34.2.1	24467
1g6gA	127	84.85	b.26.1.2	23916
2drmA	58	85.50		
1ci9A	392	86.55	e.3.1.1	64767
1t9hA	307	89.74	b.40.4.5,c.37.1.8	112358,112359