# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3cp0A 82 1.273 1smxA 96 1.975 b.40.4.5 105772 1bkb 136 2.616 1bkbA 136 3.324 b.34.5.2,b.40.4.5 24609,25341 1q46A 175 3.773 a.60.14.1,b.40.4.5 111594,111595 1hh2P 344 4.152 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 65835,65836,65837,65838 1go3E 187 8.275 b.40.4.5,d.230.1.1 83054,83055 1xeeA 91 8.575 1ok0A 74 12.21 b.5.1.1 93191 2a19A 175 14.37 2ja9A 175 14.49 1sotA 320 14.70 b.36.1.4,b.47.1.1 105852,105853 2oqkA 117 15.09 3bzcA 785 15.81 1y14B 171 16.14 b.40.4.5,d.230.1.1 116323,116324 1wi5A 119 16.38 b.40.4.5 114661 1ebfA 358 19.73 c.2.1.3,d.81.1.2 30033,39948 2je6I 251 24.93 1hoe 74 25.61 2ckkA 127 26.10 2yv5A 302 27.13 1ci9A 392 27.18 e.3.1.1 64767 2id0A 644 27.81 1l1jA 239 29.08 b.47.1.1 84516 2ix0A 663 30.67 1ugjA 141 38.56 b.41.1.3 107826 2fhdA 153 38.64 2r3uA 211 38.71 1i9bA 217 39.07 b.96.1.1 62084 1bkjA 240 39.08 d.90.1.1 40243 2hqxA 246 41.00 b.34.9.1 136675 1d7qA 143 43.45 b.40.4.5 25331 1r94A 118 44.20 b.124.1.1 97251 2pnqA 467 45.09 2hbpA 68 45.21 1s98A 107 45.38 b.124.1.1 105377 1d0yA 761 45.99 b.34.3.1,c.37.1.9 24581,32178 1t9hA 307 46.10 b.40.4.5,c.37.1.8 112358,112359 1pqhA 143 46.11 b.52.2.1 95017 1mhnA 59 46.66 b.34.9.1 84964 1fr1A 361 46.66 e.3.1.1 42734 2eqkA 85 46.99 1hn9A 317 50.21 c.95.1.2,c.95.1.2 35977,35978 1q6uA 245 50.43 d.26.1.1 95998 1qtnA 164 51.34 c.17.1.1 30999 1f5vA 240 52.96 d.90.1.1 40255 1ebuA 358 53.14 c.2.1.3,d.81.1.2 30035,39950 1pt1A 143 53.79 b.52.2.1 95084 1te0A 318 56.62 b.36.1.4,b.47.1.1 112400,112401 1p7tA 731 57.15 c.1.13.1 94319 1hnjA 317 58.36 c.95.1.2,c.95.1.2 35969,35970 1guaB 81 58.50 d.15.1.5 37619 1t5yA 190 59.23 b.122.1.1,d.17.6.3 106495,106496 1gvhA 396 59.34 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 2hgsA 474 59.83 c.30.1.4,d.142.1.6 31722,75997 1rgzA 363 62.18 e.3.1.1 97457 1xv2A 237 64.59 d.290.1.1 116076 1uv6A 210 65.08 b.96.1.1 100030 1ky9A 448 65.10 b.36.1.4,b.47.1.1 73198,73199 2iimA 62 65.16 b.34.2.1 137434 1adjA 421 65.35 c.51.1.1,d.104.1.1 33188,40737 1ux2A 212 65.93 b.96.1.1 100132 3c8iA 141 66.45 1c1yB 77 68.40 d.15.1.5 37618 1mjcA 69 70.44 b.40.4.5 25319 2incC 83 74.96 d.15.12.1 137526 1onhA 364 75.31 e.3.1.1 93357 1ybyA 215 76.20 3biyA 380 77.62 2f9hA 129 77.72 b.161.1.1 133162 1lvk 762 77.85 1zkjA 359 79.06 1at0 145 81.31 1q7hA 153 82.06 b.122.1.1,d.17.6.2 96042,96043 1gceA 364 82.35 e.3.1.1 42738 2qf3A 243 83.62 1rsgA 516 84.34 3bjoA 103 85.19 1txoA 237 85.35 d.219.1.1 112781 2fp3A 316 85.74 1mjc 69 87.26 2ffyA 358 88.50 e.3.1.1 133394 1d8cA 723 89.21 c.1.13.1 29325