Best Alignments for T0409

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1q46A	6.9531e-01	1q46A/T0409-1q46A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.60.14.1 b.40.4.5
3bzcA	1.6996e+00	3bzcA/T0409-3bzcA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2a19A	4.1787e+00	2a19A/T0409-2a19A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1y14B	4.3209e+00	1y14B/T0409-1y14B-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.40.4.5 d.230.1.1
1go3E	8.0541e+00	1go3E/T0409-1go3E-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.40.4.5 d.230.1.1
2nn6H	1.0197e+01	2nn6H/T0409-2nn6H-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2j58A	1.3770e+01	2j58A/T0409-2j58A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2idrA	1.6350e+01	2idrA/T0409-2idrA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2ba1A	1.9335e+01	2ba1A/T0409-2ba1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2fpeA	1.9451e+01	2fpeA/T0409-2fpeA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2v6oA	2.2307e+01	2v6oA/T0409-2v6oA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1zeqX	2.4143e+01	1zeqX/T0409-1zeqX-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1kl9A	2.5139e+01	1kl9A/T0409-1kl9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.60.14.1 b.40.4.5
3c8iA	2.6500e+01	3c8iA/T0409-3c8iA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1w9iA	2.6667e+01	1w9iA/T0409-1w9iA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1zuyA	2.7531e+01	1zuyA/T0409-1zuyA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1zlmA	2.8474e+01	1zlmA/T0409-1zlmA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2o9sA	2.8515e+01	2o9sA/T0409-2o9sA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1utiA	2.9354e+01	1utiA/T0409-1utiA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.2.1
2d1xA	2.9591e+01	2d1xA/T0409-2d1xA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001