# List of top-scoring protein chains for T0409.t06-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2pmzE	180	12.57		
1i94Q	104	13.70	b.40.4.5	62008
1k76A	62	20.67	b.34.2.1	84343
2vqeQ	105	20.84		
2uubQ	105	20.92	b.40.4.5	139948
1semA	58	20.93	b.34.2.1	24544
2semA	60	21.14	b.34.2.1	24546
1n32Q	104	21.48	b.40.4.5	79886
1wp5A	323	23.84	b.68.10.1	114780
2cqoA	119	32.14		
1gfcA	59	36.05	b.34.2.1	24537
1gcqA	61	36.39	b.34.2.1	60434
1zlmA	58	42.01		
1sctB	151	44.05	a.1.1.2	15003
2bkdN	134	48.17		
1x2kA	68	48.74		
1zvtA	256	49.97		
2zkqq	158	54.17		
1oebA	62	63.10	b.34.2.1	86909
1ripA	81	67.69	b.40.4.5	25357
2egaA	70	69.73		
1qd7I	89	70.44	i.1.1.3	45872
1eg0G	93	72.90	i.1.1.1	45813
2ed0A	78	78.81		
3bwxA	285	82.80		
2eqsA	103	83.89		
1s98A	107	84.70	b.124.1.1	105377
1zuyA	58	85.42		
1ov3A	138	85.92	b.34.2.1,b.34.2.1	87451,87452
1wlpB	138	89.65	b.34.2.1	121010