# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bzcA	785	1.161		
1q46A	175	1.206	a.60.14.1,b.40.4.5	111594,111595
2a19A	175	2.055		
2idrA	177	5.691		
1y14B	171	6.206	b.40.4.5,d.230.1.1	116323,116324
1w9iA	770	6.282		
2v6oA	596	8.021		
2jgbA	195	10.08		
2j58A	359	10.16		
3c8iA	141	10.28		
1kl9A	182	11.20	a.60.14.1,b.40.4.5	111574,111575
1zeqX	84	11.82		
2fpeA	62	11.82		
2bkdN	134	12.10		
3c0cA	73	13.78		
1zlmA	58	14.35		
1semA	58	14.66	b.34.2.1	24544
1gcqA	61	14.67	b.34.2.1	60434
1w70A	60	14.75		
1zx6A	58	14.83		
2g6fX	59	15.07		
2o31A	67	15.22		
2gncA	60	15.50		
2d1xA	66	15.62		
1zuyA	58	15.63		
2o9sA	67	15.92		
1uj0A	62	16.24	b.34.2.1	99449
1yn8A	59	16.69		
1utiA	58	17.30	b.34.2.1	99962
1y0mA	61	17.37		
2drmA	58	18.96		
1tg0A	68	19.33		
1jo8A	58	20.03	b.34.2.1	71774
1qd6C	240	21.55		
2ba1A	179	21.70		
1u06A	62	21.88	b.34.2.1	119404
1hd3A	62	22.43	b.34.2.1	65802
2hdaA	64	23.13		
1at0A	145	23.45	b.86.1.1	28374
1at0	145	23.53		
1a0nB	69	24.75	b.34.2.1	24469
1h6vA	499	25.10	c.3.1.5,c.3.1.5,d.87.1.1	60693,60694,60695
2jaeA	489	27.02		
3ladA	476	29.19	c.3.1.5,c.3.1.5,d.87.1.1	30573,30574,40208
2gy9D	204	29.66		
1zmdA	474	31.23		
1go3E	187	31.90	b.40.4.5,d.230.1.1	83054,83055
2pi2A	270	32.91		
2nn6H	308	34.39		
2iimA	62	36.48	b.34.2.1	137434
2a28A	54	36.64		
1eziA	228	37.30	c.68.1.13	34512
2bkhA	814	42.87		
1ruwA	69	42.88		
1kjwA	295	43.37	b.34.2.1,c.37.1.1	68643,68644
1wfwA	74	44.24	b.34.2.1	114595
2j6fA	62	44.40		
2vqeD	209	48.38		
2nloA	302	52.90		
1shfA	59	53.64	b.34.2.1	24462
1j0dA	341	56.09	c.79.1.1	83902
2uubD	209	56.94	d.66.1.2	139935
1ckaA	57	58.87	b.34.2.1	24459
2ja9A	175	58.91		
1zuuA	58	59.90	b.34.2.1	125688
2q0oA	236	60.81		
1s3eA	520	61.42	c.3.1.2,d.16.1.5	98426,98427
2og4A	254	62.37		
1aisA	182	63.39	d.129.1.1,d.129.1.1	41288,41289
2qcpX	80	63.50		
2bzyA	67	64.95		
2vknA	70	65.31		
2pkfA	334	66.13		
2ggrA	76	66.75		
2qf3A	243	67.06		
2bszA	278	68.60	d.3.1.5	129131
1qnaA	200	68.76	d.129.1.1,d.129.1.1	41226,41227
2oklA	185	71.74		
1jhdA	396	73.99	b.122.1.3,c.26.1.5	66712,66713
1zk7A	467	75.66		
1ib8A	164	76.80	b.38.2.1,d.52.4.1	71168,71169
2a08A	60	77.42		
1ootA	60	82.26	b.34.2.1	93386
1xcbA	211	85.92	a.4.5.38,c.2.1.12	109552,109553
1cqxA	403	86.14	a.1.1.2,b.43.4.2,c.25.1.5	15635,25667,31562