# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1q46A	175	0.8126	a.60.14.1,b.40.4.5	111594,111595
2a19A	175	2.662		
2idrA	177	4.728		
2j58A	359	5.114		
1y14B	171	5.357	b.40.4.5,d.230.1.1	116323,116324
3bzcA	785	5.998		
1zuyA	58	9.599		
2fpeA	62	9.606		
1semA	58	10.38	b.34.2.1	24544
2drmA	58	10.56		
1zlmA	58	10.70		
2g6fX	59	10.76		
2d1xA	66	10.86		
1utiA	58	10.88	b.34.2.1	99962
2jgbA	195	11.11		
1gcqA	61	11.56	b.34.2.1	60434
2o31A	67	11.73		
1kl9A	182	11.75	a.60.14.1,b.40.4.5	111574,111575
1w70A	60	11.76		
1yn8A	59	11.78		
1uj0A	62	11.96	b.34.2.1	99449
2o9sA	67	12.00		
1zx6A	58	12.18		
2bkdN	134	12.22		
3c8iA	141	12.29		
1jo8A	58	12.68	b.34.2.1	71774
1y0mA	61	12.82		
3c0cA	73	13.30		
2gncA	60	13.34		
1u06A	62	13.82	b.34.2.1	119404
1tg0A	68	14.70		
1go3E	187	14.98	b.40.4.5,d.230.1.1	83054,83055
2ba1A	179	16.64		
1hd3A	62	16.65	b.34.2.1	65802
2hdaA	64	16.76		
1zeqX	84	17.36		
2v6oA	596	17.77		
1w9iA	770	18.22		
1a0nB	69	18.86	b.34.2.1	24469
1ruwA	69	21.27		
2iimA	62	21.36	b.34.2.1	137434
1wfwA	74	22.67	b.34.2.1	114595
2nn6H	308	25.00		
1eziA	228	28.82	c.68.1.13	34512
1aisA	182	31.27	d.129.1.1,d.129.1.1	41288,41289
1shfA	59	31.35	b.34.2.1	24462
2a28A	54	31.85		
1at0A	145	31.87	b.86.1.1	28374
1at0	145	32.22		
1kjwA	295	32.49	b.34.2.1,c.37.1.1	68643,68644
2j6fA	62	37.63		
1ckaA	57	38.71	b.34.2.1	24459
2bzyA	67	39.03		
3ladA	476	42.67	c.3.1.5,c.3.1.5,d.87.1.1	30573,30574,40208
2gy9D	204	45.21		
1qd6C	240	46.71		
1j0dA	341	46.85	c.79.1.1	83902
2uubD	209	47.14	d.66.1.2	139935
1zk7A	467	48.14		
2ggrA	76	48.53		
2vknA	70	49.45		
1t0hA	132	51.71	b.34.2.1	106207
2oklA	185	53.38		
2bkhA	814	54.18		
1v47A	349	54.55	b.122.1.3,c.26.1.5	100292,100293
2a08A	60	54.60		
1widA	130	55.84	b.142.1.2	114667
2pi2A	270	56.51		
2vqeD	209	57.13		
1ootA	60	59.01	b.34.2.1	93386
2q0oA	236	60.21		
1zmdA	474	60.30		
1zuuA	58	60.92	b.34.2.1	125688
1mp9A	198	62.66	d.129.1.1,d.129.1.1	91385,91386
2jaeA	489	65.11		
1fiqB	350	65.39	d.87.2.1,d.145.1.3	40229,41760
1g2bA	62	65.80	b.34.2.1	24488
1cskA	71	70.25	b.34.2.1	24513
2qf3A	243	70.67		
1f2dA	341	71.85	c.79.1.1	35298
1xcbA	211	73.95	a.4.5.38,c.2.1.12	109552,109553
1qnaA	200	74.28	d.129.1.1,d.129.1.1	41226,41227
2fn0A	437	75.39	d.161.1.1	133799
1s3eA	520	76.72	c.3.1.2,d.16.1.5	98426,98427
2ja9A	175	77.49		
2eayA	233	77.78		
1ib8A	164	78.57	b.38.2.1,d.52.4.1	71168,71169
2bszA	278	81.01	d.3.1.5	129131
1i07A	60	84.49	b.34.2.1	61477
1lm8V	160	84.98	b.3.3.1	74035
1i7nA	309	86.61	c.30.1.5,d.142.1.3	83681,83682
1v82A	253	87.30	c.68.1.7	108415
3cp0A	82	88.47		
2je6I	251	89.59