# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1q46A 175 0.2500 a.60.14.1,b.40.4.5 111594,111595 3bzcA 785 0.2515 2j58A 359 0.3859 1w9iA 770 0.6444 2v6oA 596 1.086 2a19A 175 1.720 2g6fX 59 2.893 2ba1A 179 3.129 1at0A 145 3.439 b.86.1.1 28374 2hdaA 64 3.560 1w70A 60 3.643 2o9sA 67 3.702 1at0 145 3.726 2o31A 67 3.778 3c8iA 141 3.820 1tg0A 68 3.840 2nn6H 308 4.092 1yn8A 59 4.184 1zx6A 58 4.742 3c0cA 73 4.904 2fpeA 62 4.922 1y14B 171 4.990 b.40.4.5,d.230.1.1 116323,116324 1a0nB 69 5.011 b.34.2.1 24469 2drmA 58 5.177 3ladA 476 5.235 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 1zlmA 58 5.293 2bkdN 134 5.424 2gncA 60 5.566 1zuyA 58 5.625 1kl9A 182 5.808 a.60.14.1,b.40.4.5 111574,111575 1utiA 58 6.011 b.34.2.1 99962 1h6vA 499 6.136 c.3.1.5,c.3.1.5,d.87.1.1 60693,60694,60695 1gcqA 61 6.167 b.34.2.1 60434 1semA 58 6.651 b.34.2.1 24544 2iimA 62 6.694 b.34.2.1 137434 2ja9A 175 6.914 1uj0A 62 7.352 b.34.2.1 99449 2gy9D 204 7.665 1ruwA 69 7.946 1v47A 349 10.03 b.122.1.3,c.26.1.5 100292,100293 1jo8A 58 10.77 b.34.2.1 71774 1shfA 59 10.82 b.34.2.1 24462 1zmdA 474 10.88 2d1xA 66 11.56 1u06A 62 11.67 b.34.2.1 119404 2uubD 209 12.18 d.66.1.2 139935 1wfwA 74 12.21 b.34.2.1 114595 2idrA 177 12.48 1fcdA 401 12.84 c.3.1.5,c.3.1.5,d.87.1.1 30593,30594,40218 2a28A 54 13.15 1ckaA 57 13.45 b.34.2.1 24459 1eziA 228 13.47 c.68.1.13 34512 2je6I 251 13.96 1hd3A 62 14.26 b.34.2.1 65802 2bkhA 814 14.35 1go3E 187 14.74 b.40.4.5,d.230.1.1 83054,83055 2vqeD 209 15.76 1zuuA 58 17.24 b.34.2.1 125688 3cp0A 82 18.26 1y0mA 61 18.76 2jgbA 195 19.84 2vknA 70 20.68 2bzyA 67 21.16 1i07A 60 21.31 b.34.2.1 61477 2nloA 302 21.46 2og4A 254 22.09 1zk7A 467 22.10 2ggrA 76 22.76 1wi5A 119 25.43 b.40.4.5 114661 2epgA 487 26.00 1lcyA 325 26.19 b.36.1.4,b.47.1.1 73834,73835 3c4sA 66 27.34 2j6fA 62 28.02 2id0A 644 28.37 2a08A 60 30.00 2ix0A 663 30.08 2qf3A 243 32.74 2c9qA 102 33.47 b.1.18.17 130138 1ootA 60 33.73 b.34.2.1 93386 2cghA 268 35.31 1te0A 318 35.64 b.36.1.4,b.47.1.1 112400,112401 2bszA 278 35.73 d.3.1.5 129131 1cskA 71 36.39 b.34.2.1 24513 1xdiA 499 37.09 c.3.1.5,d.87.1.1 115160,115161 1qd6C 240 38.67 1nvtA 287 41.02 c.2.1.7,c.58.1.5 86270,86271 1wyxA 69 42.50 1xcbA 211 42.53 a.4.5.38,c.2.1.12 109552,109553 1hm9A 468 42.59 b.81.1.4,c.68.1.5 65866,65867 1widA 130 43.73 b.142.1.2 114667 2e63A 170 43.88 2v26A 784 44.91 1bia 321 44.96 1w4sA 174 45.99 1twlA 186 47.02 b.40.5.1 112764 2oklA 185 47.14 1z9zA 60 48.28 1r6xA 395 49.07 b.122.1.3,c.26.1.5 97167,97168 1j0dA 341 49.74 c.79.1.1 83902 1aisA 182 50.61 d.129.1.1,d.129.1.1 41288,41289 1s3eA 520 51.76 c.3.1.2,d.16.1.5 98426,98427 1jhdA 396 52.05 b.122.1.3,c.26.1.5 66712,66713 2jz2A 66 52.79 1n0wB 35 53.30 j.97.1.1 79773 2jmzA 186 54.64 1thfD 253 54.82 c.1.2.1 28535 1quqA 129 55.53 b.40.4.3 25303 2gjgA 248 56.69 1ve5A 311 57.79 c.79.1.1 120013 1omhA 293 57.87 d.89.1.5 93348 2csgA 424 60.57 b.82.2.12 130768 1wv3A 238 60.97 b.26.1.4,b.26.1.4 121318,121319 1orcA 71 64.60 a.35.1.2 17054 1i7nA 309 66.01 c.30.1.5,d.142.1.3 83681,83682 1t0hA 132 66.56 b.34.2.1 106207 2hc8A 113 66.86 1xk5A 204 67.19 1zeqX 84 67.63 2yueA 168 67.95 2cduA 452 70.17 2pi2A 270 70.27 2e70A 71 70.38 1kjwA 295 70.85 b.34.2.1,c.37.1.1 68643,68644 1z1zA 131 73.46 d.323.1.1 124366 1grjA 158 73.58 a.2.1.1,d.26.1.2 15691,38433 1g2bA 62 74.33 b.34.2.1 24488 2o88A 58 74.91 2i8aA 252 75.57 1k2eA 156 75.63 d.113.1.1 72010 2j05A 65 75.74 1j0sA 157 75.74 b.42.1.2 90747 1qnaA 200 75.90 d.129.1.1,d.129.1.1 41226,41227 2pn0A 141 76.64 1lqaA 346 77.52 c.1.7.1 84674 1ifrA 121 78.24 b.1.16.1 71203 2hbwA 235 78.27 1r61A 207 78.68 c.8.8.1 97138 2incC 83 79.48 d.15.12.1 137526 1t0qC 86 80.37 d.15.12.1 106222 2eqjA 66 81.30 1cmxA 236 81.93 d.3.1.6 37130 2ovgA 66 85.11 2hs3A 603 87.04 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 136712,136713,136714,136715 1t9fA 187 88.31 b.42.6.1 106710 1a62A 130 89.74 a.140.3.1,b.40.4.5 64708,64709