# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1q46A	175	1.581	a.60.14.1,b.40.4.5	111594,111595
2a19A	175	3.238		
3bzcA	785	3.874		
2idrA	177	3.900		
2j58A	359	5.080		
2v6oA	596	9.385		
2jgbA	195	9.634		
1y14B	171	10.95	b.40.4.5,d.230.1.1	116323,116324
1w9iA	770	13.65		
1zuyA	58	15.83		
1jo8A	58	18.60	b.34.2.1	71774
1at0	145	20.09		
3c8iA	141	20.43		
2fpeA	62	20.72		
1at0A	145	21.08	b.86.1.1	28374
1zeqX	84	21.79		
2o9sA	67	24.36		
2o31A	67	24.56		
3ladA	476	25.16	c.3.1.5,c.3.1.5,d.87.1.1	30573,30574,40208
2d1xA	66	25.68		
1tg0A	68	25.92		
2bszA	278	26.31	d.3.1.5	129131
2drmA	58	27.10		
1gcqA	61	27.42	b.34.2.1	60434
1yn8A	59	27.71		
1semA	58	28.22	b.34.2.1	24544
1qd6C	240	28.29		
1utiA	58	28.59	b.34.2.1	99962
2hdaA	64	28.95		
1y0mA	61	29.06		
1wfwA	74	29.09	b.34.2.1	114595
1zlmA	58	29.54		
1w70A	60	29.66		
1ruwA	69	29.80		
1kl9A	182	29.90	a.60.14.1,b.40.4.5	111574,111575
2g6fX	59	30.22		
1zx6A	58	30.84		
1uj0A	62	30.94	b.34.2.1	99449
2gncA	60	31.85		
2iimA	62	31.98	b.34.2.1	137434
2ba1A	179	33.71		
1zk7A	467	33.97		
1go3E	187	34.00	b.40.4.5,d.230.1.1	83054,83055
2ja9A	175	34.06		
1aisA	182	34.43	d.129.1.1,d.129.1.1	41288,41289
3c0cA	73	34.88		
2gy9D	204	40.51		
2pl3A	236	41.42		
2bkdN	134	41.74		
2oklA	185	43.02		
1zmdA	474	43.56		
2nn6H	308	44.59		
1u06A	62	44.80	b.34.2.1	119404
1qnaA	200	47.03	d.129.1.1,d.129.1.1	41226,41227
2j6fA	62	49.12		
1eziA	228	52.02	c.68.1.13	34512
1hd3A	62	52.03	b.34.2.1	65802
1a0nB	69	52.32	b.34.2.1	24469
2epgA	487	53.04		
1h6vA	499	53.37	c.3.1.5,c.3.1.5,d.87.1.1	60693,60694,60695
1mp9A	198	55.98	d.129.1.1,d.129.1.1	91385,91386
2vknA	70	57.40		
2nloA	302	61.28		
1shfA	59	62.90	b.34.2.1	24462
2q0oA	236	64.55		
2pkfA	334	64.71		
1v47A	349	67.47	b.122.1.3,c.26.1.5	100292,100293
1zpsA	138	67.50	b.168.1.1	125473
2z1uA	343	70.61		
2a28A	54	70.69		
1kjwA	295	72.79	b.34.2.1,c.37.1.1	68643,68644
1r61A	207	75.43	c.8.8.1	97138
2uubD	209	76.17	d.66.1.2	139935
2qf3A	243	78.31		
1widA	130	81.23	b.142.1.2	114667
1ckaA	57	81.73	b.34.2.1	24459
1s3eA	520	84.19	c.3.1.2,d.16.1.5	98426,98427
1zyoA	191	85.38		
2vqeD	209	86.17