# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1q46A	175	2.135	a.60.14.1,b.40.4.5	111594,111595
3bzcA	785	3.596		
2a19A	175	4.043		
2idrA	177	4.763		
2jgbA	195	11.35		
1y14B	171	12.56	b.40.4.5,d.230.1.1	116323,116324
2v6oA	596	12.99		
2j58A	359	13.37		
1jo8A	58	15.20	b.34.2.1	71774
2fpeA	62	16.23		
1zuyA	58	16.96		
2o9sA	67	17.76		
2d1xA	66	17.99		
2o31A	67	18.29		
2drmA	58	18.94		
1semA	58	20.23	b.34.2.1	24544
1w70A	60	20.94		
1utiA	58	20.95	b.34.2.1	99962
1tg0A	68	21.53		
1y0mA	61	21.70		
2gncA	60	21.89		
1zlmA	58	22.12		
2g6fX	59	23.01		
1gcqA	61	23.59	b.34.2.1	60434
2hdaA	64	23.62		
3c0cA	73	23.80		
1uj0A	62	24.92	b.34.2.1	99449
1zx6A	58	25.59		
3c8iA	141	26.10		
1yn8A	59	26.91		
1u06A	62	29.24	b.34.2.1	119404
1hd3A	62	31.44	b.34.2.1	65802
1zeqX	84	32.08		
2iimA	62	32.79	b.34.2.1	137434
1wfwA	74	32.86	b.34.2.1	114595
1eziA	228	32.88	c.68.1.13	34512
1kl9A	182	33.70	a.60.14.1,b.40.4.5	111574,111575
2bkdN	134	34.52		
3ladA	476	36.34	c.3.1.5,c.3.1.5,d.87.1.1	30573,30574,40208
1ruwA	69	37.04		
1go3E	187	37.68	b.40.4.5,d.230.1.1	83054,83055
1a0nB	69	39.39	b.34.2.1	24469
1qd6C	240	39.85		
1at0	145	41.73		
2oklA	185	42.98		
1zk7A	467	43.43		
1aisA	182	43.71	d.129.1.1,d.129.1.1	41288,41289
1zmdA	474	44.45		
2gy9D	204	46.08		
1at0A	145	46.28	b.86.1.1	28374
2j6fA	62	47.70		
2bszA	278	55.53	d.3.1.5	129131
1shfA	59	56.30	b.34.2.1	24462
2a28A	54	59.21		
1qnaA	200	59.37	d.129.1.1,d.129.1.1	41226,41227
2nn6H	308	59.74		
1ckaA	57	60.18	b.34.2.1	24459
2pl3A	236	61.24		
2ba1A	179	66.64		
2nloA	302	66.79		
2ja9A	175	67.12		
1mp9A	198	69.48	d.129.1.1,d.129.1.1	91385,91386
2vknA	70	70.78		
2q0oA	236	72.55		
1kjwA	295	73.52	b.34.2.1,c.37.1.1	68643,68644
1v47A	349	74.47	b.122.1.3,c.26.1.5	100292,100293
2hqvA	195	77.79	e.62.1.2	136674
1h6vA	499	78.17	c.3.1.5,c.3.1.5,d.87.1.1	60693,60694,60695
1w9iA	770	80.68		
1i07A	60	82.13	b.34.2.1	61477
2z1uA	343	83.28		
2epgA	487	84.91		
2fn0A	437	85.27	d.161.1.1	133799
2pi2A	270	85.61