# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1q46A	175	2.106	a.60.14.1,b.40.4.5	111594,111595
3bzcA	785	3.852		
2a19A	175	4.650		
2idrA	177	6.234		
1y14B	171	10.67	b.40.4.5,d.230.1.1	116323,116324
2j58A	359	11.71		
2v6oA	596	12.52		
2jgbA	195	13.72		
1zuyA	58	14.37		
1jo8A	58	14.91	b.34.2.1	71774
2fpeA	62	16.05		
2o9sA	67	17.55		
2o31A	67	18.32		
2d1xA	66	18.73		
1tg0A	68	19.69		
2hdaA	64	20.56		
1utiA	58	20.60	b.34.2.1	99962
1semA	58	20.91	b.34.2.1	24544
2drmA	58	20.99		
1zx6A	58	21.20		
2g6fX	59	21.50		
1y0mA	61	21.58		
1w70A	60	21.75		
3c0cA	73	21.91		
1gcqA	61	22.79	b.34.2.1	60434
2gncA	60	22.84		
1zlmA	58	22.96		
1uj0A	62	23.25	b.34.2.1	99449
3c8iA	141	23.46		
1yn8A	59	24.10		
1zeqX	84	28.87		
1kl9A	182	30.36	a.60.14.1,b.40.4.5	111574,111575
2iimA	62	31.43	b.34.2.1	137434
1wfwA	74	32.53	b.34.2.1	114595
1u06A	62	32.73	b.34.2.1	119404
1go3E	187	33.19	b.40.4.5,d.230.1.1	83054,83055
1hd3A	62	34.44	b.34.2.1	65802
1qd6C	240	34.83		
1ruwA	69	35.03		
3ladA	476	35.31	c.3.1.5,c.3.1.5,d.87.1.1	30573,30574,40208
1a0nB	69	37.63	b.34.2.1	24469
2pl3A	236	38.95		
2gy9D	204	39.10		
1zmdA	474	39.62		
1eziA	228	42.39	c.68.1.13	34512
1zk7A	467	42.39		
2oklA	185	44.56		
1at0	145	44.92		
2bkdN	134	45.88		
2j6fA	62	46.28		
1at0A	145	50.14	b.86.1.1	28374
2ja9A	175	51.05		
2nn6H	308	51.07		
1shfA	59	51.52	b.34.2.1	24462
1aisA	182	52.38	d.129.1.1,d.129.1.1	41288,41289
2ba1A	179	53.15		
2a28A	54	54.02		
2bszA	278	56.87	d.3.1.5	129131
2pi2A	270	58.88		
1w9iA	770	61.37		
2nloA	302	61.54		
1h6vA	499	61.88	c.3.1.5,c.3.1.5,d.87.1.1	60693,60694,60695
1ckaA	57	65.44	b.34.2.1	24459
2q0oA	236	66.42		
2fn0A	437	66.94	d.161.1.1	133799
1qnaA	200	70.08	d.129.1.1,d.129.1.1	41226,41227
1kjwA	295	70.19	b.34.2.1,c.37.1.1	68643,68644
2vknA	70	71.67		
1i07A	60	72.43	b.34.2.1	61477
2hqvA	195	83.53	e.62.1.2	136674
1mp9A	198	84.07	d.129.1.1,d.129.1.1	91385,91386
1s3eA	520	84.29	c.3.1.2,d.16.1.5	98426,98427
2bzyA	67	84.96		
2ggrA	76	85.01		
2vqeD	209	85.99		
1s5aA	150	86.90	d.17.4.10	98525