# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1q46A	175	1.917	a.60.14.1,b.40.4.5	111594,111595
3bzcA	785	3.878		
2nn6H	308	4.262		
1y14B	171	6.481	b.40.4.5,d.230.1.1	116323,116324
2j58A	359	12.54		
1hd3A	62	12.54	b.34.2.1	65802
2fpeA	62	14.95		
2a19A	175	14.96		
1semA	58	15.75	b.34.2.1	24544
1u06A	62	15.93	b.34.2.1	119404
1gcqA	61	16.62	b.34.2.1	60434
2og4A	254	16.69		
1w9iA	770	18.64		
1zlmA	58	19.22		
1a0nB	69	20.68	b.34.2.1	24469
1utiA	58	21.22	b.34.2.1	99962
2d1xA	66	21.52		
1yn8A	59	22.05		
1tg0A	68	23.18		
3c0cA	73	23.40		
3c8iA	141	23.46		
2drmA	58	23.47		
1zuyA	58	23.48		
1zx6A	58	23.61		
2vknA	70	23.66		
2gncA	60	25.50		
2o9sA	67	26.40		
1w70A	60	26.96		
2gy9D	204	27.96		
3ladA	476	30.11	c.3.1.5,c.3.1.5,d.87.1.1	30573,30574,40208
1widA	130	30.54	b.142.1.2	114667
2g6fX	59	31.41		
2v6oA	596	31.55		
2qgsA	225	33.40		
1wfwA	74	36.03	b.34.2.1	114595
2hdaA	64	36.31		
1ruwA	69	38.07		
2o31A	67	38.07		
1uj0A	62	38.49	b.34.2.1	99449
2a28A	54	38.52		
1ckaA	57	40.49	b.34.2.1	24459
1y0mA	61	40.58		
1xcbA	211	40.62	a.4.5.38,c.2.1.12	109552,109553
2j6fA	62	40.79		
1zmdA	474	41.10		
1auaA	296	41.69	a.5.3.1,c.13.1.1	16290,30882
1shfA	59	42.05	b.34.2.1	24462
2vqeD	209	42.49		
2iimA	62	42.89	b.34.2.1	137434
2idrA	177	43.48		
3cp0A	82	43.97		
1h6vA	499	44.76	c.3.1.5,c.3.1.5,d.87.1.1	60693,60694,60695
2q0oA	236	48.54		
1jo8A	58	50.70	b.34.2.1	71774
2bkdN	134	51.33		
1bkbA	136	51.97	b.34.5.2,b.40.4.5	24609,25341
2jgbA	195	54.68		
1go3E	187	54.71	b.40.4.5,d.230.1.1	83054,83055
2bzyA	67	55.21		
1zeqX	84	56.19		
2rb9A	334	56.95		
1qd6C	240	59.40		
1t0hA	132	60.85	b.34.2.1	106207
1bkb	136	63.50		
2bkhA	814	63.61		
2uubD	209	63.62	d.66.1.2	139935
1at0	145	63.63		
2veoA	441	63.80		
2hs3A	603	65.11	d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1	136712,136713,136714,136715
1k75A	434	67.89	c.82.1.2	68253
2ba1A	179	75.42		
1grjA	158	75.48	a.2.1.1,d.26.1.2	15691,38433
1at0A	145	76.19	b.86.1.1	28374
1jggA	60	76.76	a.4.1.1	62950
2ggrA	76	77.45		
1ug1A	92	79.30	b.34.2.1	99360
2pkfA	334	79.73		
1g2bA	62	80.25	b.34.2.1	24488
2i6cA	160	85.32	d.108.1.1	137095
2gjgA	248	86.36