# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1q46A 175 1.648 a.60.14.1,b.40.4.5 111594,111595 3bzcA 785 2.530 2a19A 175 3.428 1w9iA 770 4.407 2j58A 359 4.859 2v6oA 596 5.916 2idrA 177 6.296 1y14B 171 11.37 b.40.4.5,d.230.1.1 116323,116324 3c8iA 141 13.09 1tg0A 68 14.24 2fpeA 62 14.72 1zx6A 58 15.15 1at0A 145 16.57 b.86.1.1 28374 1zuyA 58 16.91 1at0 145 17.59 1zk7A 467 18.33 2jgbA 195 19.06 1utiA 58 19.14 b.34.2.1 99962 2d1xA 66 19.64 1w70A 60 19.80 1zlmA 58 20.08 2o9sA 67 21.54 2o31A 67 21.68 1uj0A 62 22.09 b.34.2.1 99449 2gncA 60 22.23 1gcqA 61 22.45 b.34.2.1 60434 2ba1A 179 22.75 1kl9A 182 23.22 a.60.14.1,b.40.4.5 111574,111575 2g6fX 59 23.35 1semA 58 23.43 b.34.2.1 24544 1qd6C 240 24.53 3ladA 476 26.06 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 2iimA 62 26.28 b.34.2.1 137434 1h6vA 499 26.83 c.3.1.5,c.3.1.5,d.87.1.1 60693,60694,60695 3c0cA 73 27.03 1u06A 62 27.35 b.34.2.1 119404 1yn8A 59 28.00 1zmdA 474 28.66 1hd3A 62 29.28 b.34.2.1 65802 1jo8A 58 30.12 b.34.2.1 71774 2drmA 58 33.43 1eziA 228 34.45 c.68.1.13 34512 1wfwA 74 35.51 b.34.2.1 114595 1aisA 182 37.15 d.129.1.1,d.129.1.1 41288,41289 2nn6H 308 37.80 2oklA 185 37.80 1y0mA 61 38.10 1zeqX 84 38.59 2gy9D 204 40.25 1a0nB 69 42.60 b.34.2.1 24469 2a28A 54 43.20 1go3E 187 45.16 b.40.4.5,d.230.1.1 83054,83055 1j0dA 341 45.77 c.79.1.1 83902 1mp9A 198 48.71 d.129.1.1,d.129.1.1 91385,91386 1qnaA 200 48.76 d.129.1.1,d.129.1.1 41226,41227 2bkhA 814 49.78 2bkdN 134 49.97 2ja9A 175 51.35 2vqeD 209 55.14 2je6I 251 56.55 1r61A 207 56.58 c.8.8.1 97138 2hdaA 64 56.80 1v47A 349 58.17 b.122.1.3,c.26.1.5 100292,100293 1v3yA 192 58.76 d.167.1.1 113508 2bszA 278 61.32 d.3.1.5 129131 2jaeA 489 61.39 1xdiA 499 62.19 c.3.1.5,d.87.1.1 115160,115161 2uubD 209 64.32 d.66.1.2 139935 2qf3A 243 65.28 1ckaA 57 65.76 b.34.2.1 24459 3c4sA 66 66.66 1ruwA 69 67.82 2vknA 70 67.99 2hs3A 603 68.40 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 136712,136713,136714,136715 1hm9A 468 71.60 b.81.1.4,c.68.1.5 65866,65867 2j6fA 62 75.33 2hlzA 312 77.00 1xcbA 211 77.48 a.4.5.38,c.2.1.12 109552,109553 2nloA 302 78.14 2c9qA 102 80.13 b.1.18.17 130138 2pkfA 334 80.97 2epgA 487 81.08 1shfA 59 81.30 b.34.2.1 24462 1t0hA 132 81.61 b.34.2.1 106207 2eayA 233 81.68 2rb9A 334 82.45 1zpsA 138 82.97 b.168.1.1 125473 2z1uA 343 83.61 1ve5A 311 84.99 c.79.1.1 120013 2bzyA 67 87.23 1kjwA 295 88.71 b.34.2.1,c.37.1.1 68643,68644 1widA 130 89.58 b.142.1.2 114667 2plc 274 89.69