# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3bzcA 785 0.8403 2heuA 401 2.442 2j58A 359 2.688 2a19A 175 2.749 2idrA 177 3.243 1y14B 171 3.526 b.40.4.5,d.230.1.1 116323,116324 2jgbA 195 7.248 1eziA 228 8.382 c.68.1.13 34512 2id0A 644 8.498 2r2nA 425 8.567 2z06A 252 9.818 1q46A 175 10.24 a.60.14.1,b.40.4.5 111594,111595 2r3uA 211 10.63 2gncA 60 11.11 3c8iA 141 11.26 2fpeA 62 11.34 1h6vA 499 11.45 c.3.1.5,c.3.1.5,d.87.1.1 60693,60694,60695 2drmA 58 12.24 2d1xA 66 12.38 2bkdN 134 12.44 1zeqX 84 12.92 1zx6A 58 13.42 1semA 58 13.58 b.34.2.1 24544 1utiA 58 13.92 b.34.2.1 99962 2je6I 251 14.12 1zlmA 58 14.12 2g5fA 450 14.49 d.161.1.1 134654 1v3yA 192 15.29 d.167.1.1 113508 1zuyA 58 15.48 1w70A 60 15.52 2i2cA 272 15.57 1hd3A 62 15.74 b.34.2.1 65802 1at0A 145 15.84 b.86.1.1 28374 1u06A 62 16.27 b.34.2.1 119404 2veoA 441 16.43 2g6fX 59 17.60 2qf3A 243 17.69 1w9iA 770 18.17 1at0 145 18.60 1go3E 187 18.67 b.40.4.5,d.230.1.1 83054,83055 2z1mA 345 19.13 1v47A 349 19.32 b.122.1.3,c.26.1.5 100292,100293 2o31A 67 20.12 1jo8A 58 20.75 b.34.2.1 71774 1a0nB 69 21.93 b.34.2.1 24469 1gcqA 61 22.99 b.34.2.1 60434 1qxoA 388 23.45 d.258.1.1 96539 2uy2A 294 23.73 1bifA 469 24.34 c.37.1.7,c.60.1.4 31961,34003 2pi2A 270 24.35 2o9sA 67 24.38 1te0A 318 24.56 b.36.1.4,b.47.1.1 112400,112401 1yspA 181 26.01 2iimA 62 26.57 b.34.2.1 137434 2ba1A 179 26.64 3cnyA 301 27.44 2a28A 54 28.34 1y0mA 61 29.56 1kl9A 182 30.39 a.60.14.1,b.40.4.5 111574,111575 2o0yA 260 32.52 2b5nA 323 32.69 3bcwA 123 32.73 2hs3A 603 33.23 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 136712,136713,136714,136715 2hdaA 64 33.50 2pjmA 226 33.89 2qcpX 80 36.19 1uylA 236 37.07 d.122.1.1 108147 2ej8A 160 37.16 1wfwA 74 38.11 b.34.2.1 114595 1nnfA 309 38.58 c.94.1.1 85903 1n7hA 381 39.65 c.2.1.2 80250 1qnaA 200 40.06 d.129.1.1,d.129.1.1 41226,41227 3c96A 415 40.15 4fivA 113 40.22 b.50.1.1 26762 2v74B 346 40.71 1gxcA 149 40.80 b.26.1.2 70687 2jbmA 299 41.19 2rerA 173 41.28 2ja9A 175 41.81 1ruwA 69 42.45 1lqyA 184 43.16 d.167.1.1 74212 2cghA 268 46.43 2cftA 298 47.77 2pnqA 467 48.04 2j4oA 401 48.12 2nn6H 308 49.14 1m7vA 363 51.31 d.174.1.1 78748 1lr5A 163 51.41 b.82.1.2 74215 2vknA 70 51.76 2q0oA 236 51.92 2cduA 452 52.36 2j6fA 62 52.46 1mp9A 198 53.02 d.129.1.1,d.129.1.1 91385,91386 1j0dA 341 54.72 c.79.1.1 83902 1t0hA 132 55.38 b.34.2.1 106207 1aisA 182 55.90 d.129.1.1,d.129.1.1 41288,41289 3bs1A 103 56.24 2pia 321 57.85 2vqeD 209 58.29 2bqxA 173 59.97 1v25A 541 60.88 e.23.1.1 108275 1gadO 330 60.94 c.2.1.3,d.81.1.1 29950,39865 2dkhA 639 61.82 2g9zA 348 62.64 1shfA 59 63.70 b.34.2.1 24462 1rlmA 271 63.97 c.108.1.10 111860 2os0A 188 64.53 3tssA 194 64.69 b.40.2.2,d.15.6.1 25160,37749 2uubD 209 65.58 d.66.1.2 139935 1hyuA 521 66.29 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1xpmA 396 67.39 c.95.1.2,c.95.1.2 115759,115760 1tf1A 198 68.29 d.110.2.2 106826 2fhqA 141 68.91 b.45.1.1 133497 1u7iA 136 74.25 d.32.1.7 107724 1jhsA 188 75.04 d.107.1.1 84172 1nf2A 268 75.98 c.108.1.10 91849 2oap1 511 77.17 2hqyA 305 78.39 1hy7A 173 78.86 d.92.1.11 65957 1ou8A 111 79.07 b.136.1.1 93543 1twlA 186 80.58 b.40.5.1 112764 2hlzA 312 80.58 1a62A 130 81.38 a.140.3.1,b.40.4.5 64708,64709 2z1uA 343 82.97 2q0lA 311 83.07 2au7A 175 83.42 2nq5A 755 84.18 2bzyA 67 84.80 1zyoA 191 85.31 1lm4A 194 86.32 d.167.1.1 84626 2qmoA 220 87.11 3bq5A 766 87.15 1k8tA 510 88.62 e.41.1.1 68316 2c9qA 102 88.89 b.1.18.17 130138 2ghpA 292 89.34 d.58.7.1,d.58.7.1,d.58.7.1 135184,135185,135186 1ootA 60 89.93 b.34.2.1 93386