# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1q46A	175	2.495	a.60.14.1,b.40.4.5	111594,111595
3bzcA	785	3.763		
2a19A	175	4.708		
2j58A	359	8.108		
1y14B	171	8.704	b.40.4.5,d.230.1.1	116323,116324
2idrA	177	8.997		
1w9iA	770	10.16		
2fpeA	62	10.37		
1tg0A	68	11.12		
2v6oA	596	12.02		
1zx6A	58	12.31		
2d1xA	66	12.34		
1zlmA	58	13.94		
1utiA	58	14.03	b.34.2.1	99962
1w70A	60	14.47		
3c8iA	141	14.48		
1zuyA	58	14.70		
1semA	58	16.01	b.34.2.1	24544
2o31A	67	17.67		
1eziA	228	17.77	c.68.1.13	34512
2o9sA	67	18.04		
2gncA	60	18.41		
2g6fX	59	18.47		
1u06A	62	19.14	b.34.2.1	119404
1yn8A	59	19.58		
3c0cA	73	19.97		
1uj0A	62	20.12	b.34.2.1	99449
1jo8A	58	20.16	b.34.2.1	71774
1hd3A	62	20.42	b.34.2.1	65802
2jgbA	195	22.10		
1gcqA	61	22.58	b.34.2.1	60434
2drmA	58	24.95		
1wfwA	74	25.76	b.34.2.1	114595
1zeqX	84	26.54		
2a28A	54	27.01		
2iimA	62	27.41	b.34.2.1	137434
2hdaA	64	27.71		
1a0nB	69	28.68	b.34.2.1	24469
1kl9A	182	29.21	a.60.14.1,b.40.4.5	111574,111575
1y0mA	61	29.64		
1at0A	145	29.83	b.86.1.1	28374
1at0	145	31.89		
2bkdN	134	35.48		
1qd6C	240	37.15		
2gy9D	204	37.73		
1zk7A	467	41.56		
1go3E	187	41.62	b.40.4.5,d.230.1.1	83054,83055
1j0dA	341	41.81	c.79.1.1	83902
2ba1A	179	43.00		
2pi2A	270	43.39		
1zmdA	474	43.78		
3ladA	476	44.66	c.3.1.5,c.3.1.5,d.87.1.1	30573,30574,40208
2nloA	302	48.53		
2nn6H	308	49.30		
1qnaA	200	50.45	d.129.1.1,d.129.1.1	41226,41227
1h6vA	499	53.22	c.3.1.5,c.3.1.5,d.87.1.1	60693,60694,60695
1aisA	182	56.42	d.129.1.1,d.129.1.1	41288,41289
1ruwA	69	57.03		
2vknA	70	58.28		
2j6fA	62	58.46		
2vqeD	209	59.29		
1mp9A	198	59.64	d.129.1.1,d.129.1.1	91385,91386
2uubD	209	60.61	d.66.1.2	139935
1ckaA	57	64.12	b.34.2.1	24459
1v47A	349	64.64	b.122.1.3,c.26.1.5	100292,100293
1kjwA	295	66.96	b.34.2.1,c.37.1.1	68643,68644
2qf3A	243	69.70		
2c9qA	102	69.72	b.1.18.17	130138
2bzyA	67	70.88		
1t0hA	132	72.81	b.34.2.1	106207
2bkhA	814	73.31		
2oklA	185	73.93		
1shfA	59	76.08	b.34.2.1	24462
1ootA	60	77.67	b.34.2.1	93386
2fn0A	437	79.04	d.161.1.1	133799
4fivA	113	80.09	b.50.1.1	26762
1f2dA	341	80.85	c.79.1.1	35298
1widA	130	81.48	b.142.1.2	114667
1lr5A	163	84.38	b.82.1.2	74215
1xdiA	499	87.70	c.3.1.5,d.87.1.1	115160,115161