# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1q46A	175	1.437	a.60.14.1,b.40.4.5	111594,111595
3bzcA	785	5.144		
2idrA	177	5.739		
2a19A	175	8.984		
1y14B	171	10.05	b.40.4.5,d.230.1.1	116323,116324
2nn6H	308	12.15		
2jgbA	195	16.93		
2j58A	359	18.14		
2fpeA	62	19.35		
1zlmA	58	19.86		
2g6fX	59	20.27		
1w70A	60	20.57		
2d1xA	66	20.63		
2gncA	60	20.73		
1semA	58	20.85	b.34.2.1	24544
1utiA	58	21.04	b.34.2.1	99962
2o31A	67	21.47		
2bkdN	134	21.61		
1zx6A	58	21.62		
2v6oA	596	21.69		
3c8iA	141	21.72		
2drmA	58	21.73		
2o9sA	67	21.78		
1uj0A	62	22.14	b.34.2.1	99449
1gcqA	61	22.21	b.34.2.1	60434
1zuyA	58	22.44		
3c0cA	73	22.52		
1y0mA	61	22.67		
1yn8A	59	23.34		
1u06A	62	24.21	b.34.2.1	119404
1jo8A	58	25.55	b.34.2.1	71774
2hdaA	64	26.41		
1tg0A	68	26.74		
1hd3A	62	26.89	b.34.2.1	65802
1kl9A	182	28.92	a.60.14.1,b.40.4.5	111574,111575
1a0nB	69	30.92	b.34.2.1	24469
2ba1A	179	33.47		
2fn0A	437	39.02	d.161.1.1	133799
1go3E	187	39.44	b.40.4.5,d.230.1.1	83054,83055
1zeqX	84	42.38		
2gy9D	204	44.95		
2iimA	62	47.48	b.34.2.1	137434
2pi2A	270	51.58		
1qd6C	240	51.82		
2hqvA	195	53.06	e.62.1.2	136674
1wfwA	74	54.54	b.34.2.1	114595
1w9iA	770	56.55		
2a28A	54	57.15		
1v47A	349	59.05	b.122.1.3,c.26.1.5	100292,100293
1widA	130	59.81	b.142.1.2	114667
1j0dA	341	63.71	c.79.1.1	83902
1zpsA	138	64.65	b.168.1.1	125473
2j6fA	62	65.67		
2oklA	185	67.71		
2bzyA	67	68.88		
2q0oA	236	70.37		
2epgA	487	71.34		
1eziA	228	73.72	c.68.1.13	34512
1zk7A	467	74.89		
1ruwA	69	76.29		
1ve5A	311	79.04	c.79.1.1	120013
1shfA	59	80.08	b.34.2.1	24462
1t0hA	132	82.28	b.34.2.1	106207
1ajsA	412	84.42	c.67.1.1	34276
3ladA	476	85.68	c.3.1.5,c.3.1.5,d.87.1.1	30573,30574,40208
1r61A	207	86.91	c.8.8.1	97138
2ggrA	76	88.14		
1xcbA	211	88.38	a.4.5.38,c.2.1.12	109552,109553
1ckaA	57	89.87	b.34.2.1	24459