# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1q46A	175	1.557	a.60.14.1,b.40.4.5	111594,111595
2j58A	359	5.095		
3bzcA	785	5.909		
2a19A	175	6.696		
2v6oA	596	7.769		
2idrA	177	10.50		
2nn6H	308	11.28		
2drmA	58	12.99		
2fpeA	62	13.01		
2g6fX	59	13.61		
2o31A	67	13.80		
1w9iA	770	14.08		
2hdaA	64	14.30		
1a0nB	69	14.53	b.34.2.1	24469
2o9sA	67	15.35		
1yn8A	59	15.36		
1zx6A	58	15.93		
1w70A	60	16.06		
1zuyA	58	16.53		
3c0cA	73	16.96		
3c8iA	141	17.26		
2gncA	60	18.28		
1y0mA	61	18.31		
1jo8A	58	18.54	b.34.2.1	71774
1utiA	58	18.63	b.34.2.1	99962
1gcqA	61	18.80	b.34.2.1	60434
1zlmA	58	18.81		
1semA	58	18.93	b.34.2.1	24544
1tg0A	68	19.53		
3ladA	476	19.70	c.3.1.5,c.3.1.5,d.87.1.1	30573,30574,40208
2jgbA	195	19.72		
1uj0A	62	19.98	b.34.2.1	99449
1u06A	62	21.22	b.34.2.1	119404
2gy9D	204	21.44		
1at0	145	21.76		
2d1xA	66	22.21		
2iimA	62	24.63	b.34.2.1	137434
1hd3A	62	25.55	b.34.2.1	65802
1j0dA	341	28.22	c.79.1.1	83902
1at0A	145	28.82	b.86.1.1	28374
2ba1A	179	29.87		
1y14B	171	30.87	b.40.4.5,d.230.1.1	116323,116324
2uubD	209	31.56	d.66.1.2	139935
1kl9A	182	36.49	a.60.14.1,b.40.4.5	111574,111575
1h6vA	499	36.60	c.3.1.5,c.3.1.5,d.87.1.1	60693,60694,60695
2a28A	54	37.42		
1wfwA	74	40.70	b.34.2.1	114595
2nloA	302	41.02		
1z1zA	131	42.26	d.323.1.1	124366
1zmdA	474	44.37		
1ve5A	311	45.11	c.79.1.1	120013
1f2dA	341	46.21	c.79.1.1	35298
1zk7A	467	46.81		
2bzyA	67	46.89		
2j6fA	62	47.66		
1ckaA	57	48.95	b.34.2.1	24459
1qd6C	240	51.17		
1widA	130	51.62	b.142.1.2	114667
1shfA	59	52.13	b.34.2.1	24462
2bkdN	134	53.34		
2vknA	70	54.68		
2bkhA	814	55.47		
2d5cA	263	56.86		
1ruwA	69	59.54		
1go3E	187	59.71	b.40.4.5,d.230.1.1	83054,83055
1wi5A	119	60.34	b.40.4.5	114661
2vqeD	209	60.61		
1zeqX	84	63.08		
1xcbA	211	71.28	a.4.5.38,c.2.1.12	109552,109553
2bh8A	101	73.17		
2bszA	278	74.87	d.3.1.5	129131
1xdiA	499	76.43	c.3.1.5,d.87.1.1	115160,115161
2oklA	185	76.64		
2g3aA	152	76.65	d.108.1.1	134557
1fcdA	401	77.61	c.3.1.5,c.3.1.5,d.87.1.1	30593,30594,40218
1te0A	318	78.74	b.36.1.4,b.47.1.1	112400,112401
1zpsA	138	79.48	b.168.1.1	125473
1v47A	349	79.96	b.122.1.3,c.26.1.5	100292,100293
2qf3A	243	81.19		
2og4A	254	81.72		
1ootA	60	82.17	b.34.2.1	93386
2ggrA	76	82.72		
2pi2A	270	83.35		
2hqvA	195	84.51	e.62.1.2	136674
1r61A	207	84.76	c.8.8.1	97138
1eziA	228	85.04	c.68.1.13	34512
1kjwA	295	85.58	b.34.2.1,c.37.1.1	68643,68644
2a08A	60	86.97		
1zuuA	58	88.60	b.34.2.1	125688
1cskA	71	89.41	b.34.2.1	24513