# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1q46A 175 2.839 a.60.14.1,b.40.4.5 111594,111595 3bzcA 785 3.454 2j58A 359 5.789 2v6oA 596 6.275 2a19A 175 7.916 1yn8A 59 7.973 2o31A 67 8.683 1w9iA 770 8.789 2o9sA 67 8.947 2idrA 177 10.33 1tg0A 68 10.62 3c0cA 73 11.75 2gncA 60 11.75 2hdaA 64 12.22 1zx6A 58 12.54 2g6fX 59 12.67 1uj0A 62 13.36 b.34.2.1 99449 3c8iA 141 14.30 1w70A 60 14.43 2drmA 58 14.57 1a0nB 69 14.74 b.34.2.1 24469 1jo8A 58 14.75 b.34.2.1 71774 2fpeA 62 14.96 1utiA 58 15.36 b.34.2.1 99962 1semA 58 15.45 b.34.2.1 24544 2d1xA 66 16.21 1gcqA 61 16.23 b.34.2.1 60434 2nn6H 308 16.32 2jgbA 195 16.55 1u06A 62 17.17 b.34.2.1 119404 1zlmA 58 17.79 1y14B 171 17.97 b.40.4.5,d.230.1.1 116323,116324 1hd3A 62 18.50 b.34.2.1 65802 1zuyA 58 19.07 2gy9D 204 19.38 1y0mA 61 20.18 2bkdN 134 22.54 2iimA 62 23.85 b.34.2.1 137434 1at0 145 24.22 1zeqX 84 25.51 1at0A 145 25.61 b.86.1.1 28374 1wfwA 74 30.61 b.34.2.1 114595 1ckaA 57 31.09 b.34.2.1 24459 1shfA 59 32.94 b.34.2.1 24462 2a28A 54 33.07 1qd6C 240 34.78 2ba1A 179 37.69 2j6fA 62 38.75 2bszA 278 40.76 d.3.1.5 129131 1widA 130 41.35 b.142.1.2 114667 2vknA 70 41.50 1wi5A 119 42.05 b.40.4.5 114661 2hqvA 195 42.40 e.62.1.2 136674 1j0dA 341 46.67 c.79.1.1 83902 1zmdA 474 46.77 2bzyA 67 46.83 2z1uA 343 48.44 3ladA 476 48.60 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 1t0hA 132 49.88 b.34.2.1 106207 1i07A 60 51.83 b.34.2.1 61477 1kl9A 182 52.26 a.60.14.1,b.40.4.5 111574,111575 1zuuA 58 55.26 b.34.2.1 125688 1zk7A 467 56.07 2g3aA 152 56.72 d.108.1.1 134557 1wyxA 69 57.36 1ruwA 69 59.96 2qf3A 243 60.67 1h6vA 499 61.68 c.3.1.5,c.3.1.5,d.87.1.1 60693,60694,60695 2uubD 209 61.70 d.66.1.2 139935 2vqeD 209 62.43 2epgA 487 62.54 2a08A 60 64.73 2hs3A 603 65.33 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 136712,136713,136714,136715 2nloA 302 67.98 1cskA 71 69.69 b.34.2.1 24513 2fn0A 437 71.77 d.161.1.1 133799 2rczA 81 71.82 1z1zA 131 74.12 d.323.1.1 124366 1lr5A 163 74.66 b.82.1.2 74215 1r61A 207 75.94 c.8.8.1 97138 1g2bA 62 76.71 b.34.2.1 24488 2ggrA 76 80.43 1go3E 187 82.10 b.40.4.5,d.230.1.1 83054,83055 3cp0A 82 83.69 2qcpX 80 83.86 1f2dA 341 84.28 c.79.1.1 35298 1nvtA 287 84.56 c.2.1.7,c.58.1.5 86270,86271 1jdqA 98 84.98 d.68.3.3 66559 2z30B 65 87.83 1xcbA 211 88.61 a.4.5.38,c.2.1.12 109552,109553 1ootA 60 89.65 b.34.2.1 93386