# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1q46A	175	1.347	a.60.14.1,b.40.4.5	111594,111595
2nn6H	308	3.013		
3bzcA	785	3.690		
1y14B	171	5.795	b.40.4.5,d.230.1.1	116323,116324
2hs3A	603	9.787	d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1	136712,136713,136714,136715
1go3E	187	10.20	b.40.4.5,d.230.1.1	83054,83055
2a19A	175	10.37		
1a8d	452	11.44		
1vk3A	615	13.30	d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1	100846,100847,100848,100849
2je6I	251	19.71		
1r61A	207	21.00	c.8.8.1	97138
2idrA	177	21.36		
1kjwA	295	22.71	b.34.2.1,c.37.1.1	68643,68644
2veoA	441	23.10		
1zpsA	138	24.91	b.168.1.1	125473
2qgsA	225	25.10		
1aisA	182	28.05	d.129.1.1,d.129.1.1	41288,41289
2ougA	162	32.37		
2rb9A	334	33.31		
3c8iA	141	33.51		
2ba1A	179	35.36		
1j0sA	157	35.57	b.42.1.2	90747
1sjiA	350	39.27		
2fpeA	62	40.56		
1iq0A	592	45.29	a.27.1.1,c.26.1.1,d.67.2.1	66257,66258,66259
2bkdN	134	45.85		
1wv3A	238	49.94	b.26.1.4,b.26.1.4	121318,121319
2hlzA	312	49.98		
2o9sA	67	53.90		
1pneA	139	54.72	d.110.1.1	40866
1t9fA	187	57.20	b.42.6.1	106710
2rfrA	155	57.51		
2z30B	65	57.55		
1zmdA	474	57.62		
1ruwA	69	58.88		
1qd6C	240	59.03		
1widA	130	60.09	b.142.1.2	114667
1a0nB	69	61.83	b.34.2.1	24469
2hdaA	64	61.86		
1zlmA	58	63.55		
1zuyA	58	64.99		
1h6vA	499	65.04	c.3.1.5,c.3.1.5,d.87.1.1	60693,60694,60695
1at0A	145	65.24	b.86.1.1	28374
1at0	145	66.35		
1xcbA	211	67.15	a.4.5.38,c.2.1.12	109552,109553
2hddA	61	68.17	a.4.1.1	15971
1utiA	58	69.94	b.34.2.1	99962
1a79A	171	71.45	c.52.2.1,d.75.1.1	33340,39739
2j58A	359	71.75		
2d1xA	66	71.89		
1yn8A	59	73.37		
1tltA	319	73.97	c.2.1.3,d.81.1.5	107135,107136
1mbmA	198	74.39	b.47.1.3	78916
2iimA	62	74.51	b.34.2.1	137434
2g6fX	59	75.42		
2bkhA	814	76.69		
1wfwA	74	79.59	b.34.2.1	114595
1uj0A	62	80.98	b.34.2.1	99449
2o31A	67	81.11		
3ladA	476	82.17	c.3.1.5,c.3.1.5,d.87.1.1	30573,30574,40208
2q0oA	236	82.52		
2drmA	58	82.70		
3c0cA	73	84.76		
2v6oA	596	84.96		
1kl9A	182	85.70	a.60.14.1,b.40.4.5	111574,111575
1gtkA	313	86.31	c.94.1.1,d.50.2.1	76346,76347
1jo8A	58	88.34	b.34.2.1	71774