# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1q46A	175	4.295	a.60.14.1,b.40.4.5	111594,111595
2ba1A	179	8.595		
3bzcA	785	10.56		
2nn6H	308	10.87		
2idrA	177	14.69		
2fpeA	62	15.33		
2a19A	175	18.45		
2gy9D	204	20.37		
1qd6C	240	20.65		
2o9sA	67	22.32		
2hdaA	64	22.68		
1zuyA	58	23.88		
2je6I	251	27.30		
2o31A	67	30.75		
2jgbA	195	31.50		
1tg0A	68	31.99		
2gncA	60	36.86		
2j58A	359	38.03		
2q0oA	236	39.22		
1a0nB	69	41.45	b.34.2.1	24469
1zlmA	58	41.70		
1yn8A	59	41.74		
2og4A	254	43.40		
3c8iA	141	43.89		
2g6fX	59	45.35		
2bkdN	134	45.55		
1xv2A	237	45.77	d.290.1.1	116076
1y14B	171	48.33	b.40.4.5,d.230.1.1	116323,116324
1utiA	58	48.38	b.34.2.1	99962
1uj0A	62	48.56	b.34.2.1	99449
2drmA	58	49.78		
1w70A	60	51.49		
3c0cA	73	51.78		
1go3E	187	52.95	b.40.4.5,d.230.1.1	83054,83055
1zx6A	58	53.23		
2ja9A	175	55.94		
1zeqX	84	57.58		
1gcqA	61	57.64	b.34.2.1	60434
1hd3A	62	58.34	b.34.2.1	65802
2pi2A	270	58.39		
1zpsA	138	58.45	b.168.1.1	125473
1w9iA	770	62.36		
1semA	58	62.67	b.34.2.1	24544
1cc1S	283	63.07	e.19.1.1	43313
1y0mA	61	64.29		
2iimA	62	65.32	b.34.2.1	137434
1wfwA	74	65.97	b.34.2.1	114595
1jo8A	58	67.00	b.34.2.1	71774
1ruwA	69	67.50		
1gtkA	313	67.59	c.94.1.1,d.50.2.1	76346,76347
2qaiA	111	72.37		
1i7nA	309	72.75	c.30.1.5,d.142.1.3	83681,83682
1r61A	207	73.38	c.8.8.1	97138
1kl9A	182	75.61	a.60.14.1,b.40.4.5	111574,111575
2d1xA	66	76.24		
1xcbA	211	77.17	a.4.5.38,c.2.1.12	109552,109553
3c4sA	66	80.43		
2hlzA	312	82.44		
2id0A	644	83.63		
1eziA	228	83.81	c.68.1.13	34512
2f23A	156	84.94	a.2.1.1,d.26.1.2	132797,132798
2vqeD	209	88.06