# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1q46A	175	0.4247	a.60.14.1,b.40.4.5	111594,111595
3bzcA	785	2.468		
1xeeA	91	2.918		
1y14B	171	3.417	b.40.4.5,d.230.1.1	116323,116324
1bkbA	136	4.328	b.34.5.2,b.40.4.5	24609,25341
1smxA	96	4.571	b.40.4.5	105772
3cp0A	82	6.144		
1bkb	136	7.650		
1txoA	237	8.261	d.219.1.1	112781
2bmoB	194	17.85	d.17.4.4	128806
1vc3B	97	18.52		
1pqhA	143	21.88	b.52.2.1	95017
1hh2P	344	24.30	b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1	65835,65836,65837,65838
1d7qA	143	27.02	b.40.4.5	25331
2a19A	175	28.35		
2dfuA	264	28.53		
1js8A	394	28.61	a.86.1.1,b.112.1.1	67219,67220
1qtnA	164	28.79	c.17.1.1	30999
1wi5A	119	29.26	b.40.4.5	114661
1f5vA	240	31.26	d.90.1.1	40255
2ja9A	175	34.11		
1y8xB	98	35.23		
1m7vA	363	39.44	d.174.1.1	78748
2cx1A	187	40.47	b.122.1.1,d.17.6.4	130967,130968
2cm1A	260	40.86		
1go3E	187	42.06	b.40.4.5,d.230.1.1	83054,83055
1ujcA	161	42.61		
1bkjA	240	43.50	d.90.1.1	40243
2gxfA	142	44.72		
1q15A	503	47.02	c.26.2.1,d.153.1.1	95538,95539
1uheA	97	47.28		
1gttA	429	49.76	d.177.1.1,d.177.1.1	70529,70530
1ybyA	215	50.25		
1bob	320	50.45		
2nn6H	308	52.92		
2h3bA	494	54.56		
2h4pA	394	54.99		
1pyoA	167	55.60	c.17.1.1	95370
2qgqA	304	61.10		
2f02A	323	61.57	c.72.1.1	132649
2fp3A	316	62.10		
1dm9A	133	63.96	d.66.1.3	39560
1sawA	225	64.09	d.177.1.1	112050
1nkqA	259	65.50	d.177.1.1	103862
1ci9A	392	67.54	e.3.1.1	64767
1npsA	88	68.39	b.11.1.1	23622
3c8iA	141	68.67		
1gvhA	396	69.14	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
1d0cA	444	70.55	d.174.1.1	64769
1v7pB	128	71.65	d.169.1.1	108407
1nox	205	71.88		
2dkoA	146	72.51		
1gy7A	125	73.34	d.17.4.2	70738
2pkfA	334	74.41		
1o17A	345	74.70	a.46.2.1,c.27.1.1	80765,80766
2eifA	136	75.58	b.34.5.2,b.40.4.5	24607,25339
1wzoA	246	76.43		
1y13A	181	77.37	d.96.1.2	116319
2j58A	359	79.89		
1mjcA	69	80.05	b.40.4.5	25319
1u7zA	226	85.05	c.72.3.1	113107
2a6pA	208	85.53		
2p0wA	324	86.55		
1nmsA	249	87.59	c.17.1.1	85879
2c4eA	302	87.97		
1tvgA	153	88.34	b.18.1.9	112683
2rghA	571	89.03		
1vl4A	447	89.18	d.283.1.1	108718