Best Alignments for T0409

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2a19A	2.6719e-01	2a19A/T0409-2a19A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1q46A	9.8115e-01	1q46A/T0409-1q46A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.60.14.1 b.40.4.5
1y14B	1.8878e+00	1y14B/T0409-1y14B-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.40.4.5 d.230.1.1
1go3E	2.8729e+00	1go3E/T0409-1go3E-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.40.4.5 d.230.1.1
1w9iA	7.1507e+00	1w9iA/T0409-1w9iA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2j58A	7.3797e+00	2j58A/T0409-2j58A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1lvk	8.0516e+00	1lvk/T0409-1lvk-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3bzcA	8.4919e+00	3bzcA/T0409-3bzcA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1d0yA	8.5458e+00	1d0yA/T0409-1d0yA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.3.1 c.37.1.9
2ba1A	9.0184e+00	2ba1A/T0409-2ba1A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2akaA	9.7622e+00	2akaA/T0409-2akaA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1zeqX	1.4935e+01	1zeqX/T0409-1zeqX-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2je6I	1.6229e+01	2je6I/T0409-2je6I-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1at0	1.6312e+01	1at0/T0409-1at0-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2nn6H	1.8973e+01	2nn6H/T0409-2nn6H-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3c0cA	1.9041e+01	3c0cA/T0409-3c0cA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2d1xA	2.0323e+01	2d1xA/T0409-2d1xA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1wdxA	2.0447e+01	1wdxA/T0409-1wdxA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1zlmA	2.0745e+01	1zlmA/T0409-1zlmA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1mvwA	2.1570e+01	1mvwA/T0409-1mvwA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	i.15.1.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001