# List of top-scoring protein chains for T0409.t04-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1wp5A	323	13.39	b.68.10.1	114780
1k3rA	268	21.34	b.40.4.10,c.116.1.2	72018,72019
1gowA	489	22.16	c.1.8.4	28981
1uwiA	489	22.52	c.1.8.4	119759
1uwsA	489	24.41	c.1.8.4	108073
1k76A	62	26.59	b.34.2.1	84343
1semA	58	26.61	b.34.2.1	24544
2semA	60	26.85	b.34.2.1	24546
1zuyA	58	27.06		
1ov3A	138	34.55	b.34.2.1,b.34.2.1	87451,87452
2pmzE	180	35.05		
1wlpB	138	35.55	b.34.2.1	121010
1uecA	193	36.38	b.34.2.1,b.34.2.1	88481,88482
1ng2A	193	36.44	b.34.2.1,b.34.2.1	85660,85661
1oebA	62	38.81	b.34.2.1	86909
1gfcA	59	41.86	b.34.2.1	24537
1gcqA	61	42.44	b.34.2.1	60434
2bkdN	134	42.92		
2z57B	65	46.22		
1zlmA	58	49.24		
2egaA	70	49.58		
1x2kA	68	50.89		
1ruwA	69	51.21		
1h3hA	60	52.25	b.34.2.1	83468
1va7A	70	53.99		
2eqsA	103	56.18		
2nwmA	65	58.38		
1mv3A	213	58.79	b.34.2.1	91468
2ed0A	78	63.17		
2z56B	65	64.65		
2z58B	66	66.22		
3bwxA	285	68.63		
2z30B	65	68.74		
1utiA	58	72.07	b.34.2.1	99962
1ripA	81	72.73	b.40.4.5	25357
1qd7I	89	77.85	i.1.1.3	45872
2zkqq	158	79.17		
1eg0G	93	80.02	i.1.1.1	45813
2yunA	79	82.77		
1i94Q	104	83.02	b.40.4.5	62008
2ysqA	81	87.14