# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2a19A	175	0.4474		
1w9iA	770	2.417		
2j58A	359	3.300		
1q46A	175	4.707	a.60.14.1,b.40.4.5	111594,111595
1d0yA	761	4.736	b.34.3.1,c.37.1.9	24581,32178
1at0	145	5.036		
2akaA	776	5.344		
1y14B	171	7.189	b.40.4.5,d.230.1.1	116323,116324
1lvk	762	7.252		
1zeqX	84	7.695		
1at0A	145	10.64	b.86.1.1	28374
3bzcA	785	10.84		
3c0cA	73	11.06		
1go3E	187	11.42	b.40.4.5,d.230.1.1	83054,83055
2g6fX	59	11.72		
1zlmA	58	12.44		
1y0mA	61	12.82		
1ywpA	64	13.05		
1yn8A	59	13.30		
1w70A	60	14.22		
2gncA	60	14.49		
2drmA	58	14.73		
1tg0A	68	14.76		
2ba1A	179	14.79		
1zx6A	58	15.04		
2ak5A	64	15.36		
2idrA	177	16.35		
2bz8A	58	17.43		
1a0nB	69	17.74	b.34.2.1	24469
1wdxA	69	18.67		
1x2kA	68	19.87		
1mvwA	840	20.70	i.15.1.1	79523
1u06A	62	21.53	b.34.2.1	119404
2d1xA	66	23.30		
3c8iA	141	23.70		
2hdaA	64	23.91		
1hd3A	62	24.09	b.34.2.1	65802
2iimA	62	27.78	b.34.2.1	137434
1jo8A	58	29.89	b.34.2.1	71774
2jgbA	195	31.77		
1zuyA	58	35.55		
1semA	58	36.47	b.34.2.1	24544
2bkdN	134	37.08		
1gcqA	61	37.18	b.34.2.1	60434
2j6fA	62	38.39		
1ej1A	190	39.71	d.86.1.1	40144
2ggrA	76	40.44		
1lm4A	194	40.53	d.167.1.1	84626
1ruwA	69	41.46		
2fpeA	62	42.79		
2bzyA	67	43.54		
1uj0A	62	43.65	b.34.2.1	99449
2qcpX	80	44.42		
1qdlA	422	44.89	d.161.1.1	42088
2o9sA	67	49.59		
2a28A	54	50.12		
2chcA	170	50.15		
1oebA	62	51.19	b.34.2.1	86909
1utiA	58	54.33	b.34.2.1	99962
2o88A	58	55.20		
1z9zA	60	55.64		
2o31A	67	56.34		
2incC	83	57.32	d.15.12.1	137526
1shfA	59	58.53	b.34.2.1	24462
2vknA	70	58.84		
1aisA	182	64.10	d.129.1.1,d.129.1.1	41288,41289
1zmdA	474	64.91		
2a08A	60	65.13		
1yfnA	118	66.34	b.136.1.1	123080
1ckaA	57	66.96	b.34.2.1	24459
2uubD	209	67.92	d.66.1.2	139935
1tuc	63	70.90		
2gy9D	204	71.27		
2pi2A	270	73.44		
1g97A	459	74.24	b.81.1.4,c.68.1.5	60394,60395
1zk7A	467	76.52		
2tpt	440	77.48		
1qnaA	200	77.71	d.129.1.1,d.129.1.1	41226,41227
1mp9A	198	80.31	d.129.1.1,d.129.1.1	91385,91386
1t0qC	86	81.74	d.15.12.1	106222
2ja9A	175	82.76		
1gxcA	149	82.88	b.26.1.2	70687
3cp0A	82	83.74		
1kl9A	182	84.22	a.60.14.1,b.40.4.5	111574,111575
1hh2P	344	84.40	b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1	65835,65836,65837,65838
2vqeD	209	86.27		
1zuuA	58	86.50	b.34.2.1	125688
1ou8A	111	87.28	b.136.1.1	93543
1a8vA	121	89.47	a.140.3.1,b.40.4.5	64712,64713