# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2a19A	175	0.4270		
1w9iA	770	1.949		
1q46A	175	2.571	a.60.14.1,b.40.4.5	111594,111595
1y14B	171	3.048	b.40.4.5,d.230.1.1	116323,116324
2akaA	776	3.754		
2j58A	359	4.422		
1lvk	762	4.462		
1go3E	187	4.919	b.40.4.5,d.230.1.1	83054,83055
1d0yA	761	5.388	b.34.3.1,c.37.1.9	24581,32178
1at0	145	6.252		
1zeqX	84	6.813		
1wdxA	69	9.333		
1zlmA	58	10.45		
2ak5A	64	10.56		
2g6fX	59	10.57		
1w70A	60	10.62		
2ba1A	179	10.62		
1tg0A	68	10.70		
1at0A	145	10.80	b.86.1.1	28374
1yn8A	59	11.32		
1mvwA	840	11.40	i.15.1.1	79523
1ywpA	64	12.70		
2idrA	177	12.89		
1y0mA	61	13.38		
2drmA	58	13.47		
1x2kA	68	13.48		
1u06A	62	13.66	b.34.2.1	119404
1a0nB	69	14.14	b.34.2.1	24469
1zx6A	58	14.15		
2bz8A	58	14.25		
2gncA	60	14.27		
3c0cA	73	14.33		
1hd3A	62	14.53	b.34.2.1	65802
2d1xA	66	15.16		
2iimA	62	15.18	b.34.2.1	137434
3c8iA	141	15.25		
2hdaA	64	16.53		
1zuyA	58	16.74		
2jgbA	195	18.98		
1ruwA	69	19.67		
1shfA	59	22.87	b.34.2.1	24462
1tuc	63	24.05		
1semA	58	24.09	b.34.2.1	24544
2incC	83	26.11	d.15.12.1	137526
2chcA	170	26.34		
1oebA	62	26.39	b.34.2.1	86909
1utiA	58	27.08	b.34.2.1	99962
1gcqA	61	27.19	b.34.2.1	60434
1uj0A	62	27.25	b.34.2.1	99449
2vknA	70	27.90		
2bzyA	67	27.95		
1z9zA	60	28.93		
1zk7A	467	29.10		
1ckaA	57	29.19	b.34.2.1	24459
1jo8A	58	31.11	b.34.2.1	71774
3bzcA	785	33.66		
1aisA	182	34.41	d.129.1.1,d.129.1.1	41288,41289
1ej1A	190	34.64	d.86.1.1	40144
2id0A	644	35.90		
2o9sA	67	36.01		
2fpeA	62	37.14		
2ja9A	175	37.95		
2o31A	67	38.60		
1qdlA	422	39.17	d.161.1.1	42088
2a28A	54	39.95		
1wlpB	138	40.69	b.34.2.1	121010
2j6fA	62	40.88		
2ggrA	76	41.05		
2bkdN	134	42.87		
2nn6H	308	44.35		
1t0qC	86	47.46	d.15.12.1	106222
2a08A	60	47.53		
2qcpX	80	47.74		
1g97A	459	48.99	b.81.1.4,c.68.1.5	60394,60395
1mp9A	198	53.38	d.129.1.1,d.129.1.1	91385,91386
1i40A	175	53.88	b.40.5.1	66024
2o88A	58	54.33		
1kl9A	182	54.89	a.60.14.1,b.40.4.5	111574,111575
2dfuA	264	56.97		
1zuuA	58	67.08	b.34.2.1	125688
2bkhA	814	67.93		
2a8kA	108	68.83	d.243.1.2	126404
1qsmA	152	68.93	d.108.1.1	40808
3cp0A	82	69.02		
2uubD	209	71.27	d.66.1.2	139935
1yfnA	118	71.70	b.136.1.1	123080
2hs3A	603	72.51	d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1	136712,136713,136714,136715
1ou8A	111	73.56	b.136.1.1	93543
1snrA	341	73.79	b.6.1.3,b.6.1.3	105823,105824
2je6I	251	74.28		
1a8vA	121	78.19	a.140.3.1,b.40.4.5	64712,64713
1vk3A	615	80.02	d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1	100846,100847,100848,100849
1lm4A	194	81.75	d.167.1.1	84626
2ix0A	663	82.90		
1qnaA	200	83.58	d.129.1.1,d.129.1.1	41226,41227
1ve5A	311	83.79	c.79.1.1	120013
1tzjA	338	84.10	c.79.1.1	112868
2pi2A	270	86.26