# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2a19A 175 0.9348 2j58A 359 1.175 1w9iA 770 1.498 1at0 145 1.597 1lvk 762 2.132 1d0yA 761 2.278 b.34.3.1,c.37.1.9 24581,32178 1at0A 145 2.811 b.86.1.1 28374 2akaA 776 3.304 3bzcA 785 5.966 1y14B 171 7.494 b.40.4.5,d.230.1.1 116323,116324 1q46A 175 7.836 a.60.14.1,b.40.4.5 111594,111595 2g6fX 59 8.870 2ak5A 64 9.145 1go3E 187 9.747 b.40.4.5,d.230.1.1 83054,83055 1tg0A 68 9.859 1wdxA 69 10.02 1zx6A 58 10.54 2hdaA 64 10.55 1w70A 60 11.07 1a0nB 69 11.41 b.34.2.1 24469 1yn8A 59 11.72 2drmA 58 12.07 3c0cA 73 12.54 2gncA 60 12.91 2iimA 62 13.65 b.34.2.1 137434 1x2kA 68 14.06 1zlmA 58 14.29 2ba1A 179 14.45 2bz8A 58 19.10 2idrA 177 21.64 2id0A 644 22.56 2vknA 70 22.58 1mvwA 840 22.84 i.15.1.1 79523 2bkdN 134 24.11 2ggrA 76 24.74 1zuyA 58 24.76 1hd3A 62 24.78 b.34.2.1 65802 2ja9A 175 24.87 3c8iA 141 25.26 1u06A 62 25.72 b.34.2.1 119404 2je6I 251 25.87 1shfA 59 27.03 b.34.2.1 24462 2d1xA 66 27.19 1zmdA 474 28.20 1gcqA 61 29.50 b.34.2.1 60434 1ruwA 69 29.59 1z9zA 60 29.66 1semA 58 29.85 b.34.2.1 24544 1zeqX 84 30.22 1ckaA 57 30.53 b.34.2.1 24459 3cp0A 82 30.73 1ywpA 64 31.75 2nn6H 308 31.82 1lm4A 194 31.95 d.167.1.1 84626 1zk7A 467 32.76 2incC 83 33.48 d.15.12.1 137526 1y0mA 61 33.92 2fpeA 62 34.28 2dfuA 264 34.52 2bzyA 67 34.70 2a28A 54 35.73 2o9sA 67 35.80 1ey4A 149 36.06 b.40.1.1 24815 2jgbA 195 36.13 1ei5A 520 36.15 b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 2o88A 58 37.23 1zuuA 58 37.86 b.34.2.1 125688 1ts9A 102 37.98 b.137.1.1 112618 1oebA 62 39.74 b.34.2.1 86909 2o31A 67 41.11 2a08A 60 41.24 1yfnA 118 41.85 b.136.1.1 123080 1utiA 58 42.14 b.34.2.1 99962 2bkhA 814 42.82 1t0qC 86 43.70 d.15.12.1 106222 1uj0A 62 45.17 b.34.2.1 99449 1i07A 60 45.64 b.34.2.1 61477 2uubD 209 48.27 d.66.1.2 139935 1i40A 175 48.31 b.40.5.1 66024 1i76A 163 48.55 d.92.1.11 61877 1suuA 312 48.69 b.68.10.1 99006 2j6fA 62 48.73 1x9iA 302 50.89 c.80.1.1 114997 2gy9D 204 51.68 1zi0A 307 52.77 1aisA 182 52.94 d.129.1.1,d.129.1.1 41288,41289 2iw2A 494 53.26 2r3uA 211 56.05 1bymA 97 63.13 b.34.1.2 24458 1tuc 63 64.34 1jo8A 58 65.44 b.34.2.1 71774 2vqeD 209 65.95 3c4sA 66 66.74 1wyxA 69 67.31 1kl9A 182 68.60 a.60.14.1,b.40.4.5 111574,111575 2hbwA 235 68.71 1t3lA 337 70.05 b.34.2.1,c.37.1.1 106358,106359 1g97A 459 71.21 b.81.1.4,c.68.1.5 60394,60395 2ix0A 663 73.36 1a8vA 121 74.11 a.140.3.1,b.40.4.5 64712,64713 1n0wB 35 75.60 j.97.1.1 79773 1wlpB 138 75.89 b.34.2.1 121010 1oqkA 97 78.93 b.137.1.1 93419 1zvtA 256 79.94 1z1zA 131 80.03 d.323.1.1 124366 2e63A 170 80.99 1g6gA 127 85.24 b.26.1.2 23916 1ou8A 111 87.00 b.136.1.1 93543 1zkoA 136 87.60