# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2a19A 175 0.3637 1q46A 175 1.829 a.60.14.1,b.40.4.5 111594,111595 1w9iA 770 2.310 2j58A 359 3.858 1lvk 762 4.433 1at0 145 4.607 1d0yA 761 5.242 b.34.3.1,c.37.1.9 24581,32178 1y14B 171 6.508 b.40.4.5,d.230.1.1 116323,116324 1go3E 187 7.547 b.40.4.5,d.230.1.1 83054,83055 1zeqX 84 10.11 2akaA 776 10.20 1at0A 145 10.63 b.86.1.1 28374 2idrA 177 12.46 3bzcA 785 15.36 1mvwA 840 16.25 i.15.1.1 79523 2jgbA 195 17.66 1tg0A 68 18.90 1wdxA 69 19.21 1ywpA 64 20.40 1aisA 182 21.02 d.129.1.1,d.129.1.1 41288,41289 1y0mA 61 21.73 3c0cA 73 23.41 2hdaA 64 23.70 1zlmA 58 24.20 3c8iA 141 24.26 2iimA 62 24.30 b.34.2.1 137434 2g6fX 59 24.56 2d1xA 66 24.60 2gncA 60 24.62 1yn8A 59 24.67 1yfnA 118 24.72 b.136.1.1 123080 2inuA 410 26.03 2drmA 58 26.43 1w70A 60 26.66 2bz8A 58 27.13 1zx6A 58 28.50 2ak5A 64 28.77 1gxcA 149 28.87 b.26.1.2 70687 1zuyA 58 29.02 1a0nB 69 29.07 b.34.2.1 24469 1zk7A 467 29.97 2chcA 170 31.01 2vknA 70 32.29 1u06A 62 33.92 b.34.2.1 119404 1hd3A 62 35.02 b.34.2.1 65802 2ba1A 179 35.13 1ou8A 111 35.15 b.136.1.1 93543 1ruwA 69 36.00 1qdlA 422 36.70 d.161.1.1 42088 1x2kA 68 37.25 1z9zA 60 38.28 2ja9A 175 39.27 1hh2P 344 42.86 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 65835,65836,65837,65838 1mp9A 198 43.73 d.129.1.1,d.129.1.1 91385,91386 1jo8A 58 44.69 b.34.2.1 71774 2j6fA 62 44.93 1qnaA 200 44.94 d.129.1.1,d.129.1.1 41226,41227 2nn6H 308 49.24 1gx3A 284 49.91 d.3.1.5 70678 1x9iA 302 51.04 c.80.1.1 114997 1lm4A 194 52.79 d.167.1.1 84626 1a8vA 121 56.13 a.140.3.1,b.40.4.5 64712,64713 1shfA 59 56.14 b.34.2.1 24462 1r5lA 262 56.78 a.5.3.1,c.13.1.1 97099,97100 1semA 58 62.26 b.34.2.1 24544 2id0A 644 62.63 1gcqA 61 62.91 b.34.2.1 60434 2bkdN 134 63.03 2hqvA 195 64.48 e.62.1.2 136674 2bzyA 67 66.16 1i2sA 282 67.69 e.3.1.1 71104 1kl9A 182 68.37 a.60.14.1,b.40.4.5 111574,111575 1tuc 63 68.70 2o9sA 67 70.29 2ggrA 76 70.67 1ej1A 190 71.43 d.86.1.1 40144 1oebA 62 71.63 b.34.2.1 86909 2o31A 67 72.18 1zin 217 72.29 1utiA 58 73.35 b.34.2.1 99962 1uj0A 62 76.17 b.34.2.1 99449 2a28A 54 78.37 2fpeA 62 78.68 1ckaA 57 79.58 b.34.2.1 24459 1v47A 349 80.87 b.122.1.3,c.26.1.5 100292,100293 1zmdA 474 81.95 2tpt 440 82.26 1zpsA 138 84.61 b.168.1.1 125473 2ajrA 331 89.45 c.72.1.1 126892