# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2a19A	175	0.2648		
1q46A	175	1.055	a.60.14.1,b.40.4.5	111594,111595
1w9iA	770	3.418		
1lvk	762	4.743		
2j58A	359	5.040		
1at0	145	5.259		
1d0yA	761	5.600	b.34.3.1,c.37.1.9	24581,32178
1go3E	187	6.480	b.40.4.5,d.230.1.1	83054,83055
2idrA	177	8.041		
1y14B	171	8.146	b.40.4.5,d.230.1.1	116323,116324
1zeqX	84	10.02		
2akaA	776	11.07		
2jgbA	195	11.29		
3bzcA	785	12.95		
1wdxA	69	14.16		
1ywpA	64	14.99		
1y0mA	61	15.45		
2gncA	60	15.59		
1tg0A	68	15.70		
1at0A	145	15.71	b.86.1.1	28374
2hdaA	64	16.12		
1w70A	60	16.93		
2drmA	58	17.08		
3c0cA	73	17.19		
2d1xA	66	18.08		
1zlmA	58	18.90		
2ak5A	64	19.12		
2bz8A	58	19.17		
2g6fX	59	19.53		
1zx6A	58	20.83		
1mvwA	840	23.39	i.15.1.1	79523
1yn8A	59	23.51		
1u06A	62	24.47	b.34.2.1	119404
2iimA	62	24.74	b.34.2.1	137434
3c8iA	141	24.91		
1z9zA	60	24.92		
1hd3A	62	25.68	b.34.2.1	65802
1zuyA	58	26.15		
1qdlA	422	26.67	d.161.1.1	42088
1x2kA	68	27.47		
1a0nB	69	27.74	b.34.2.1	24469
1aisA	182	28.67	d.129.1.1,d.129.1.1	41288,41289
2ba1A	179	29.07		
1hh2P	344	29.46	b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1	65835,65836,65837,65838
1gxcA	149	30.40	b.26.1.2	70687
1jo8A	58	32.41	b.34.2.1	71774
2tpt	440	34.59		
1ruwA	69	35.11		
1ej1A	190	38.02	d.86.1.1	40144
2j6fA	62	38.75		
1kl9A	182	38.81	a.60.14.1,b.40.4.5	111574,111575
2inuA	410	39.61		
2vknA	70	39.67		
1yfnA	118	39.97	b.136.1.1	123080
1zk7A	467	40.93		
1oebA	62	42.66	b.34.2.1	86909
2bzyA	67	43.21		
2ja9A	175	43.97		
1semA	58	44.52	b.34.2.1	24544
1gcqA	61	45.03	b.34.2.1	60434
1utiA	58	47.22	b.34.2.1	99962
2fpeA	62	47.41		
1shfA	59	47.46	b.34.2.1	24462
1qnaA	200	48.81	d.129.1.1,d.129.1.1	41226,41227
2ggrA	76	51.35		
2chcA	170	51.94		
1tuc	63	52.45		
1mp9A	198	52.86	d.129.1.1,d.129.1.1	91385,91386
1ou8A	111	52.96	b.136.1.1	93543
2o9sA	67	53.41		
1uj0A	62	54.89	b.34.2.1	99449
1ckaA	57	55.29	b.34.2.1	24459
1a8vA	121	56.97	a.140.3.1,b.40.4.5	64712,64713
2a28A	54	58.90		
2o31A	67	58.97		
1i07A	60	59.41	b.34.2.1	61477
2uubD	209	60.23	d.66.1.2	139935
2ajrA	331	64.06	c.72.1.1	126892
2nn6H	308	67.34		
2bkdN	134	67.97		
2o88A	58	70.62		
1i2sA	282	72.17	e.3.1.1	71104
2id0A	644	77.26		
1lm4A	194	77.50	d.167.1.1	84626
1gx3A	284	82.13	d.3.1.5	70678
2gy9D	204	82.15		
1zmdA	474	84.49