# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2a19A	175	0.2691		
1q46A	175	1.111	a.60.14.1,b.40.4.5	111594,111595
1w9iA	770	3.238		
1lvk	762	5.104		
1d0yA	761	5.538	b.34.3.1,c.37.1.9	24581,32178
1at0	145	5.913		
2j58A	359	6.613		
1y14B	171	8.199	b.40.4.5,d.230.1.1	116323,116324
1go3E	187	8.538	b.40.4.5,d.230.1.1	83054,83055
2akaA	776	10.27		
3bzcA	785	11.21		
1zeqX	84	11.69		
2idrA	177	13.44		
1ywpA	64	15.29		
1y0mA	61	15.47		
2hdaA	64	15.48		
1wdxA	69	15.67		
1at0A	145	16.30	b.86.1.1	28374
1tg0A	68	16.45		
2drmA	58	16.51		
1zlmA	58	17.16		
2d1xA	66	17.29		
2bz8A	58	18.12		
3c0cA	73	18.21		
2g6fX	59	18.42		
2gncA	60	18.67		
2ak5A	64	19.58		
1w70A	60	19.78		
1yn8A	59	19.88		
2jgbA	195	20.32		
1zx6A	58	21.29		
3c8iA	141	21.33		
1mvwA	840	22.74	i.15.1.1	79523
1a0nB	69	23.19	b.34.2.1	24469
1x2kA	68	23.27		
1u06A	62	23.60	b.34.2.1	119404
1hd3A	62	24.39	b.34.2.1	65802
1z9zA	60	24.61		
2iimA	62	25.33	b.34.2.1	137434
1zuyA	58	26.16		
1qdlA	422	28.79	d.161.1.1	42088
2ba1A	179	31.03		
1ruwA	69	31.39		
1jo8A	58	32.62	b.34.2.1	71774
2vknA	70	36.53		
1zk7A	467	36.73		
1aisA	182	37.18	d.129.1.1,d.129.1.1	41288,41289
1hh2P	344	37.59	b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1	65835,65836,65837,65838
1kl9A	182	38.03	a.60.14.1,b.40.4.5	111574,111575
2j6fA	62	38.18		
2ja9A	175	39.90		
1gxcA	149	42.07	b.26.1.2	70687
1shfA	59	42.90	b.34.2.1	24462
1semA	58	43.43	b.34.2.1	24544
1yfnA	118	43.50	b.136.1.1	123080
1oebA	62	44.26	b.34.2.1	86909
1a8vA	121	44.86	a.140.3.1,b.40.4.5	64712,64713
1utiA	58	45.91	b.34.2.1	99962
2ggrA	76	46.37		
2inuA	410	46.57		
1gcqA	61	47.26	b.34.2.1	60434
2bzyA	67	48.47		
1tuc	63	49.02		
1mp9A	198	49.04	d.129.1.1,d.129.1.1	91385,91386
2bkdN	134	50.34		
2fpeA	62	52.13		
1ckaA	57	52.91	b.34.2.1	24459
2tpt	440	53.01		
2chcA	170	53.73		
1uj0A	62	55.00	b.34.2.1	99449
1ej1A	190	55.02	d.86.1.1	40144
1ou8A	111	55.30	b.136.1.1	93543
2o9sA	67	55.55		
1qnaA	200	56.68	d.129.1.1,d.129.1.1	41226,41227
1i07A	60	57.05	b.34.2.1	61477
2a28A	54	57.46		
1i2sA	282	62.34	e.3.1.1	71104
2o31A	67	62.84		
2nn6H	308	63.13		
2o88A	58	64.13		
2id0A	644	68.66		
2uubD	209	70.66	d.66.1.2	139935
1zmdA	474	73.15		
2ajrA	331	73.21	c.72.1.1	126892
1zpsA	138	76.47	b.168.1.1	125473
1lm4A	194	77.93	d.167.1.1	84626
1gx3A	284	80.12	d.3.1.5	70678
1i40A	175	83.25	b.40.5.1	66024
1zin	217	84.55		
2pi2A	270	84.86		
1x9iA	302	85.19	c.80.1.1	114997